miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggcgattaa 141
||||||||||||||||||||| |||| |||||
Sbjct: 82 gagaatcttgatgatgctgcagcggcaattaa 113
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 142 gagaatcttgatgatgctgcatcggc 167
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 85 gagaatcttgatgatgctgcatcggc 110
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 110 gagaatcttgatgatgctgcatcggc 135
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 131 gagaatcttgatgatgctgcatcggc 156
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 81 gagaatcttgatgatgctgcatcggc 106
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 90 gagaatcttgatgatgctgcatcggc 115
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 89 gagaatcttgatgatgctgcatcggc 114
