miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;AAAA02013919.1/20837-21004 39946:Oryza sativa
Indica Group
Length = 168
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 tgggaataggaacatggaggaaagcctaaagctaaattttctgctccagtattggagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37 tgggaataggaacatggaggaaagcctaaagctaaattttctgctccagtattggagcta 96
Query: 61 gagatttgctcagttttcccgatgcctcctattccta 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 97 gagatttgctcagttttcccgatgcctcctattccta 133
>RF01911;MIR2118;ABXC01004282.1/30150-29982 4558:Sorghum bicolor
(sorghum)
Length = 169
Score = 52.0 bits (26), Expect = 1e-06
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 36 attttctgctccagtattggagctagagatttgctca-gttttcccgatgcctcctattc 94
||||||| ||| || ||||||| |||| ||||||| ||||||||||||||||||||||
Sbjct: 71 attttctcctctagcattggaggtagaaatttgcttgtgttttcccgatgcctcctattc 130
Query: 95 ct 96
||
Sbjct: 131 ct 132
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa
Indica Group
Length = 172
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tgggaataggaacatggaggaaagcctaaa 30
||||||| ||||||||||||||||||||||
Sbjct: 37 tgggaatgggaacatggaggaaagcctaaa 66
>RF01911;MIR2118;ABXC01004286.1/22374-22204 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tgggaataggaacatggaggaaagccta 28
||||||| ||||||||||||||||||||
Sbjct: 37 tgggaatgggaacatggaggaaagccta 64
>RF01911;MIR2118;ABXC01004286.1/17945-17773 4558:Sorghum bicolor
(sorghum)
Length = 173
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgggaataggaacatggaggaaagcc 26
||||||| ||||||||||||||||||
Sbjct: 37 tgggaatgggaacatggaggaaagcc 62
