miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;AACV01009812.1/26461-26632 39947:Oryza sativa
Japonica Group
Length = 172
Score = 341 bits (172), Expect = 2e-93
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 6 gtcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaaaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaaaa 60
Query: 66 acatatatagttttcttcccctctaaagttagaggttgaaatttgctgtgtgtttttccc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acatatatagttttcttcccctctaaagttagaggttgaaatttgctgtgtgtttttccc 120
Query: 126 aatgcctcccatgcctacagttcttaggcactccttccacttcctgttggct 177
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatgcctcccatgcctacagttcttaggcactccttccacttcctgttggct 172
>RF01911;MIR2118;AC135459.3/87322-87489 39947:Oryza sativa Japonica
Group
Length = 168
Score = 170 bits (86), Expect = 4e-42
Identities = 149/168 (88%), Gaps = 4/168 (2%)
Strand = Plus / Plus
Query: 10 ggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaaaaacat 69
|||||||||||||||||| |||||||||||| |||||||||||||||||||| ||
Sbjct: 5 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggaggaagaac--- 61
Query: 70 atatagttttcttcccctctaaagttagaggttgaaatttgctgtgtgtttttcccaatg 129
|| || |||||||||| |||||| ||||||||||| ||||||| | ||||||||||||
Sbjct: 62 atgtacttttcttccc-tctaaatttagaggttgagatttgctaagcatttttcccaatg 120
Query: 130 cctcccatgcctacagttcttaggcactccttccacttcctgttggct 177
|||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 121 cctcccatgcctacagttcttaggtactccttccccttcctgttggct 168
>RF01911;MIR2118;ABXC01004282.1/24617-24453 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 83.8 bits (42), Expect = 7e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 6 gtcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaa 63
|||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||
Sbjct: 1 gtcaggaagaggaagaaacgagtgtctaagagcagtgggcatgggaacatggaggaaa 58
Score = 60.0 bits (30), Expect = 1e-08
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 120 tttcccaatgcctcccatgcctacagttcttaggcactccttccacttcctgttggct 177
|||||| |||||||||||||||| |||||||| ||||||||| |||||| ||||||
Sbjct: 108 tttcccgatgcctcccatgcctattgttcttagttactccttccccttccttttggct 165
>RF01911;MIR2118;ABXC01004286.1/22135-21991 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 73.8 bits (37), Expect = 7e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 10 ggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaa 62
|||||||||||||||||| |||||||||||| |||||||||||||| |||||
Sbjct: 5 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatgtaggaa 57
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 127 atgcctcccatgcctacagttcttaggcactccttccacttcctgttggct 177
|||||||||||||||| ||||||||| |||||||| ||| || ||||||
Sbjct: 95 atgcctcccatgcctattgttcttaggtgctccttcctcttgcttttggct 145
>RF01911;MIR2118;AL606706.3/90746-90578 39947:Oryza sativa
Japonica Group
Length = 169
Score = 73.8 bits (37), Expect = 7e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 7 tcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaa 63
||||||||||||||||||||| |||| ||||| | |||||||||||||||||||||
Sbjct: 2 tcaggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggaggaaa 58
>RF01911;MIR2118;AAAA02013919.1/23719-23885 39946:Oryza sativa
Indica Group
Length = 167
Score = 67.9 bits (34), Expect = 4e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 6 gtcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaa 63
||||||||||||||||| |||| |||||||||| |||||||||||||||||||||
Sbjct: 1 gtcaggaagaggaagaatagagcacctaagagcagtgggcatgggaacatggaggaaa 58
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa
Indica Group
Length = 172
Score = 65.9 bits (33), Expect = 2e-10
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 8 caggaagaggaagaaa-agagagtctaagagcagcaggcatgggaacatggaggaaa 63
|||||||||||||||| |||||| |||||||||| || ||||||||||||||||||
Sbjct: 3 caggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaaa 59
Score = 52.0 bits (26), Expect = 3e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 97 gaggttgaaatttgctgtgtgtttttcccaatgcctcccatgcctacagttcttaggcac 156
||||| |||||||| | || |||||||| ||||||||||| |||| ||||||| ||||
Sbjct: 92 gaggtggaaatttggtttggttttttcccgatgcctcccattcctatcgttcttaagcac 151
Query: 157 tccttccacttcct 170
| ||||| ||||||
Sbjct: 152 ttcttcctcttcct 165
>RF01911;MIR2118;ABXC01004282.1/25056-24902 4558:Sorghum bicolor
(sorghum)
Length = 155
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 127 atgcctcccatgcctacagttcttaggcactccttccacttcct 170
||||||||||| ||||||||||||||| |||||||| ||||||
Sbjct: 105 atgcctcccattcctacagttcttaggtgctccttcctcttcct 148
>RF01911;MIR2118;ABXC01004282.1/27391-27234 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 56.0 bits (28), Expect = 2e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 120 tttcccaatgcctcccatgcctacagttcttaggcactccttccacttcctg 171
||||||||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct: 101 tttcccaatgcctcccatgcctattgttcttaggtgttccttcctcttcctg 152
>RF01911;MIR2118;AP008210.1/21663107-21662944 39947:Oryza sativa
Japonica Group
Length = 164
Score = 56.0 bits (28), Expect = 2e-07
Identities = 54/62 (87%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 2 gtgagtcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggagga 61
||||| |||||||||||||| |||| ||||||||||| ||| ||||||||||| ||||
Sbjct: 1 gtgagccaggaagaggaaga---gagactctaagagcagtaggaatgggaacatgaagga 57
Query: 62 aa 63
||
Sbjct: 58 aa 59
>RF01911;MIR2118;AL606706.3/87890-87721 39947:Oryza sativa
Japonica Group
Length = 170
Score = 54.0 bits (27), Expect = 7e-07
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 10 ggaagaggaagaaaa-gagagtctaagagcagcaggcatgggaacatggaggaaa 63
||||||||||||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct: 5 ggaagaggaagaaaaagagcacctaagagcattaggcatgggaacatggaggaaa 59
>RF01911;MIR2118;ABXC01004282.1/27623-27465 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 52.0 bits (26), Expect = 3e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 120 tttcccaatgcctcccatgcctacagttcttaggcactccttccacttcc 169
|||||||||||||||||| |||| ||||||||| |||||||| |||||
Sbjct: 102 tttcccaatgcctcccattcctatcgttcttaggttctccttcctcttcc 151
Score = 50.1 bits (25), Expect = 1e-05
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 8 caggaagaggaagaaa-agagagtctaagagcagcaggcatgggaacatggaggaaa 63
|||||||||||||||| ||| |||||||||||| || |||||| |||||||||||
Sbjct: 3 caggaagaggaagaaagagatagtctaagagcaatgggaatgggagcatggaggaaa 59
>RF01911;MIR2118;AL606706.3/88345-88174 39947:Oryza sativa
Japonica Group
Length = 172
Score = 52.0 bits (26), Expect = 3e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaa-agagagtctaagagcagcaggcatgggaacatggaggaaaaa 65
||||||||||||||| || ||||||||||||| || |||||||||| |||||||||
Sbjct: 4 aggaagaggaagaaagaggtagtctaagagcagtgggaatgggaacatagaggaaaaa 61
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 118 tttttcccaatgcctcccatgcctacagttcttaggcactccttccacttcct 170
|||||||| ||||||||||| |||| ||||||||| |||||||| ||||||
Sbjct: 113 tttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttcct 165
>RF01911;MIR2118;AP008210.1/21658799-21658648 39947:Oryza sativa
Japonica Group
Length = 152
Score = 52.0 bits (26), Expect = 3e-06
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 10 ggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaa 63
|||||||||||| | ||| |||||||||| | ||| ||||||||||||||||||
Sbjct: 5 ggaagaggaagaca-gagggtctaagagctgtaggaatgggaacatggaggaaa 57
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 120 tttcccaatgcctcccatgcctacagttcttaggcactccttccacttcct 170
||||| |||||||||||| |||| ||||||||| |||||||| ||||||
Sbjct: 95 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttcct 145
>RF01911;MIR2118;ABXC01004282.1/22775-22606 4558:Sorghum bicolor
(sorghum)
Length = 170
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 120 tttcccaatgcctcccatgcctacagttcttaggcactccttccacttcctgttggc 176
||||||||||||||||||||||| ||| |||| |||||||| |||||| |||||
Sbjct: 113 tttcccaatgcctcccatgcctattgttgttagtttctccttccccttccttttggc 169
>RF01911;MIR2118;ABXC01004283.1/17551-17393 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 6 gtcaggaagaggaagaaaagagagtctaagag 37
|||||||||||||||||| ||||| |||||||
Sbjct: 1 gtcaggaagaggaagaaaggagagcctaagag 32
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 48.1 bits (24), Expect = 4e-05
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaa-agagagtctaagagcagcaggcatgggaacatggaggaaa 63
||||||||||||||| || |||||||||||| || ||||||||||||||||||
Sbjct: 4 aggaagaggaagaaagagtctgtctaagagcagtgggaatgggaacatggaggaaa 59
>RF01911;MIR2118;AP008210.1/21667363-21667201 39947:Oryza sativa
Japonica Group
Length = 163
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 24 agagagtctaagagcagcaggcatgggaacatggaggaaa 63
||||| ||||||||||| ||| ||||||||||| ||||||
Sbjct: 19 agagactctaagagcagtaggaatgggaacatgaaggaaa 58
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 127 atgcctcccatgcctacagttcttagg 153
||||||||||| |||||||||||||||
Sbjct: 113 atgcctcccattcctacagttcttagg 139
