miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;AACV01009812.1/23383-23542 39947:Oryza sativa
Japonica Group
Length = 160
Score = 317 bits (160), Expect = 3e-86
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 6 ccagggaagaggaagaacgagagggttcaatagcagtgggaatgggaacatggaggaaag 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccagggaagaggaagaacgagagggttcaatagcagtgggaatgggaacatggaggaaag 60
Query: 66 catgagctctaaatttcctccaaaggagatcctgctttgtgttttcctgatgcctcccat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catgagctctaaatttcctccaaaggagatcctgctttgtgttttcctgatgcctcccat 120
Query: 126 tcctattgttcttgggtgctccttccccttccttcttggc 165
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcctattgttcttgggtgctccttccccttccttcttggc 160
>RF01911;MIR2118;ABXC01004282.1/25056-24902 4558:Sorghum bicolor
(sorghum)
Length = 155
Score = 79.8 bits (40), Expect = 1e-14
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 104 gtgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
||||||||||||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct: 94 gtgttttcctgatgcctcccattcctacagttcttaggtgctccttcctcttcctt 149
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 41 gtgggaatgggaacatggaggaaagcatga 70
||||||||||||||||||||||||||||||
Sbjct: 36 gtgggaatgggaacatggaggaaagcatga 65
>RF01911;MIR2118;AP008210.1/21658799-21658648 39947:Oryza sativa
Japonica Group
Length = 152
Score = 79.8 bits (40), Expect = 1e-14
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
|||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 95 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttcctt 146
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 ggaatgggaacatggaggaaag 65
||||||||||||||||||||||
Sbjct: 37 ggaatgggaacatggaggaaag 58
>RF01911;MIR2118;ABXC01004283.1/14206-14032 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 77.8 bits (39), Expect = 4e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 109 ttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
||||||||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct: 119 ttcctgatgcctcccattcctatggttcttaggtgctccttcctcttcctt 169
>RF01911;MIR2118;AL606706.3/95698-95530 39947:Oryza sativa Japonica
Group
Length = 169
Score = 77.8 bits (39), Expect = 4e-14
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 105 tgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||
Sbjct: 109 tgttttcctgatgcctctcattcctatggttctagggtgctccttcctcttcctt 163
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 75.8 bits (38), Expect = 2e-13
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctcccattcctattgttcttgggtgctccttccccttcc 157
||||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 118 tttcctggtgcctcccattcctattgttcttaggtgctccttcctcttcc 167
Score = 73.8 bits (37), Expect = 7e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 37 agcagtgggaatgggaacatggaggaaagcatgagct 73
|||||||||||||||||||||||||||||||||||||
Sbjct: 32 agcagtgggaatgggaacatggaggaaagcatgagct 68
>RF01911;MIR2118;AL606706.3/88345-88174 39947:Oryza sativa Japonica
Group
Length = 172
Score = 73.8 bits (37), Expect = 7e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
|||||| |||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct: 114 ttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttcctt 166
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 37 agcagtgggaatgggaacatggaggaaa 64
|||||||||||||||||||| |||||||
Sbjct: 32 agcagtgggaatgggaacatagaggaaa 59
>RF01911;MIR2118;ABXC01004286.1/22135-21991 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 69.9 bits (35), Expect = 1e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 109 ttcctgatgcctcccattcctattgttcttgggtgctccttcc 151
||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 89 ttcctgatgcctcccatgcctattgttcttaggtgctccttcc 131
Score = 44.1 bits (22), Expect = 6e-04
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 10 ggaagaggaagaacgagagggttcaatagcagtgggaatgggaacatggaggaa 63
||||||||||||| ||||||| || ||||||||| ||||||||||| |||||
Sbjct: 5 ggaagaggaagaaa-agagggtctaagagcagtgggcatgggaacatgtaggaa 57
>RF01911;MIR2118;AL606706.3/90746-90578 39947:Oryza sativa Japonica
Group
Length = 169
Score = 69.9 bits (35), Expect = 1e-11
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 105 tgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
||||||||||||||||||||| ||||||||||| | |||||||||| |||||||
Sbjct: 109 tgttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttcctt 163
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 gtgggaatgggaacatggaggaaagc 66
||||| ||||||||||||||||||||
Sbjct: 35 gtgggcatgggaacatggaggaaagc 60
>RF01911;MIR2118;AP008217.1/7727087-7726916 39947:Oryza sativa
Japonica Group
Length = 172
Score = 67.9 bits (34), Expect = 4e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 114 gatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
|||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct: 121 gatgcctcccattcctatcgttcttaggtgctccttcctcttcctt 166
>RF01911;MIR2118;AP008210.1/21663107-21662944 39947:Oryza sativa
Japonica Group
Length = 164
Score = 65.9 bits (33), Expect = 2e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctattgttcttgggtgctccttcc 151
||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct: 106 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcc 150
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 37 agcagtgggaatgggaacatggaggaaagc 66
|||||| |||||||||||||| ||||||||
Sbjct: 32 agcagtaggaatgggaacatgaaggaaagc 61
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa
Indica Group
Length = 172
Score = 65.9 bits (33), Expect = 2e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 10 ggaagaggaagaacgagagggttcaatagcagtgggaatgggaacatggaggaaagc 66
||||||||||||| ||||| | || ||||||||||||||||||||||||||||||
Sbjct: 5 ggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaaagc 61
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctattgttctt 138
|||||| |||||||||||||||||| ||||||
Sbjct: 114 ttttcccgatgcctcccattcctatcgttctt 145
>RF01911;MIR2118;ABXC01004282.1/24617-24453 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 63.9 bits (32), Expect = 7e-10
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
||||| |||||||||||| |||||||||||| | | ||||||||||||||||
Sbjct: 108 tttcccgatgcctcccatgcctattgttcttagttactccttccccttcctt 159
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 37 agcagtgggaatgggaacatggaggaaagc 66
||||||||| ||||||||||||||||||||
Sbjct: 31 agcagtgggcatgggaacatggaggaaagc 60
>RF01911;MIR2118;ABXC01004282.1/24832-24688 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 61.9 bits (31), Expect = 3e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 105 tgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
|||||||||| |||||| |||||||| |||||| |||||||||||| |||||||
Sbjct: 85 tgttttcctgttgcctctcattcctacggttcttaggtgctccttcctcttcctt 139
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 37 agcagtgggaatgggaacatggaggaaagcatga 70
||||||||||||| ||||||| ||||||||||||
Sbjct: 32 agcagtgggaatgagaacatgaaggaaagcatga 65
>RF01911;MIR2118;AL606706.3/95450-95277 39947:Oryza sativa Japonica
Group
Length = 174
Score = 61.9 bits (31), Expect = 3e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 101 tttgtgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
||||||||||||| ||||||||||||||||||| ||| | | |||||||| |||||||
Sbjct: 110 tttgtgttttcctagtgcctcccattcctattgtccttagatactccttcctcttcctt 168
>RF01911;MIR2118;AACV01009812.1/17181-17352 39947:Oryza sativa
Japonica Group
Length = 172
Score = 61.9 bits (31), Expect = 3e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 101 tttgtgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
||||||||||||| |||| |||||||||||||||| || | | |||||||| |||||||
Sbjct: 108 tttgtgttttcctaatgcttcccattcctattgttgttagatactccttcctcttcctt 166
>RF01911;MIR2118;ABXC01004286.1/17945-17773 4558:Sorghum bicolor
(sorghum)
Length = 173
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 37 agcagtgggaatgggaacatggaggaaagc 66
||||||||||||||||||||||||||||||
Sbjct: 32 agcagtgggaatgggaacatggaggaaagc 61
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctcccattcctattgttctt 138
||||||| |||||||||||||||| ||||||
Sbjct: 116 tttcctggtgcctcccattcctatcgttctt 146
>RF01911;MIR2118;ABXC01004286.1/22374-22204 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 37 agcagtgggaatgggaacatggaggaaagc 66
||||||||||||||||||||||||||||||
Sbjct: 32 agcagtgggaatgggaacatggaggaaagc 61
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 115 atgcctcccattcctattgttcttgggtgctcc 147
|||||||||||||||||||||||| |||||||
Sbjct: 121 atgcctcccattcctattgttcttaagtgctcc 153
>RF01911;MIR2118;AACV01009812.1/12630-12796 39947:Oryza sativa
Japonica Group
Length = 167
Score = 60.0 bits (30), Expect = 1e-08
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 110 tcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
||||||||||||||| |||||||||| | |||||||||||| |||||||
Sbjct: 112 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcctt 161
>RF01911;MIR2118;ABXC01004283.1/19912-19741 4558:Sorghum bicolor
(sorghum)
Length = 172
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 37 agcagtgggaatgggaacatggaggaaag 65
|||||||||||||||||||||||||||||
Sbjct: 32 agcagtgggaatgggaacatggaggaaag 60
>RF01911;MIR2118;ABXC01004282.1/27623-27465 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 56.0 bits (28), Expect = 2e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 10 ggaagaggaagaacgagagggttcaatagcagtgggaatgggaacatggaggaaagcatg 69
||||||||||||| |||| || || |||| ||||||||||| ||||||||||||||||
Sbjct: 5 ggaagaggaagaaagagatagtctaagagcaatgggaatgggagcatggaggaaagcatg 64
Score = 54.0 bits (27), Expect = 6e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 115 atgcctcccattcctattgttcttgggtgctccttccccttcc 157
||||||||||||||||| |||||| ||| |||||||| |||||
Sbjct: 109 atgcctcccattcctatcgttcttaggttctccttcctcttcc 151
>RF01911;MIR2118;ABXC01004282.1/27391-27234 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 115 atgcctcccattcctattgttcttgggtgctccttccccttcct 158
||||||||||| |||||||||||| |||| ||||||| ||||||
Sbjct: 108 atgcctcccatgcctattgttcttaggtgttccttcctcttcct 151
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 42 tgggaatgggaacatggaggaaagcatgagct 73
|||| ||||||||||||||||||| |||||||
Sbjct: 37 tgggcatgggaacatggaggaaagaatgagct 68
>RF01911;MIR2118;AC135459.3/87322-87489 39947:Oryza sativa
Japonica Group
Length = 168
Score = 54.0 bits (27), Expect = 6e-07
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 9 gggaagaggaagaacgagagggttcaatagcagtgggaatgggaacatggaggaa 63
|||||||||||||| ||||||| || ||||||||| |||||||||||||||||
Sbjct: 4 gggaagaggaagaaa-agagggtctaagagcagtgggcatgggaacatggaggaa 57
Score = 48.1 bits (24), Expect = 4e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 115 atgcctcccattcctattgttcttgggtgctccttccccttcct 158
||||||||||| |||| |||||| ||| |||||||||||||||
Sbjct: 118 atgcctcccatgcctacagttcttaggtactccttccccttcct 161
>RF01911;MIR2118;AAAA02013919.1/23719-23885 39946:Oryza sativa
Indica Group
Length = 167
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 37 agcagtgggaatgggaacatggaggaaagc 66
||||||||| ||||||||||||||||||||
Sbjct: 31 agcagtgggcatgggaacatggaggaaagc 60
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 105 tgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcc 157
|||||||| ||||||||||| |||||||| ||| ||| |||||||| |||||
Sbjct: 107 tgttttcccgatgcctcccaagcctattgtccttaggtactccttcctcttcc 159
>RF01911;MIR2118;ABXC01004283.1/13954-13790 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 10 ggaagaggaagaacgagagggttcaatagcagtgggaatgggaacatggaggaaagc 66
||||||||||||| ||||||| || ||||||||||||| ||| || |||||||||
Sbjct: 5 ggaagaggaagaaacagagggtataagagcagtgggaatgagaatattgaggaaagc 61
>RF01911;MIR2118;ABXC01004282.1/22775-22606 4558:Sorghum bicolor
(sorghum)
Length = 170
Score = 50.1 bits (25), Expect = 1e-05
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 115 atgcctcccattcctattgttcttgggtgctccttccccttcctt 159
||||||||||| ||||||||| || | | ||||||||||||||||
Sbjct: 120 atgcctcccatgcctattgttgttagtttctccttccccttcctt 164
>RF01911;MIR2118;ABXC01004286.1/20347-20177 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 10 ggaagaggaagaacgagagggttcaatagcagtgggaatgggaacatggaggaaagc 66
|||| ||||||| |||||||| || | |||| |||||||||||||||||||||||
Sbjct: 5 ggaataggaagatcgagagggcctaagaacagtaggaatgggaacatggaggaaagc 61
>RF01911;MIR2118;ABXC01004283.1/20134-19984 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 105 tgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcc 157
|||||||||||||||||| ||||||| | |||| ||| ||||||||| ||||
Sbjct: 91 tgttttcctgatgcctcctattcctaaggctcttaggttctccttccctttcc 143
>RF01911;MIR2118;ABXC01004285.1/25657-25493 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctcccattcctattgtt 135
|||||||||||||| |||||||||||||
Sbjct: 108 tttcctgatgcctctcattcctattgtt 135
>RF01911;MIR2118;ABXC01004283.1/17551-17393 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 48.1 bits (24), Expect = 4e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 114 gatgcctcccattcctattgttcttgggtgctccttccccttccttcttggc 165
||||||||||||||||||| ||||| | |||||||| ||||||| |||||
Sbjct: 108 gatgcctcccattcctattattcttaagcactccttcctcttcctttttggc 159
>RF01911;MIR2118;AP008210.1/21667363-21667201 39947:Oryza sativa
Japonica Group
Length = 163
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattccta 130
||||||||||||||||||||||||
Sbjct: 105 ttttcctgatgcctcccattccta 128
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 37 agcagtgggaatgggaacatggaggaaagc 66
|||||| |||||||||||||| ||||||||
Sbjct: 31 agcagtaggaatgggaacatgaaggaaagc 60
>RF01911;MIR2118;AP008210.1/21651167-21650991 39947:Oryza sativa
Japonica Group
Length = 177
Score = 48.1 bits (24), Expect = 4e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 104 gtgttttcctgatgcctcccattcctattgttcttgggtgctccttcc 151
||||||||| ||||||| ||| ||||| |||||| ||||||||||||
Sbjct: 116 gtgttttcccgatgcctgtcatgcctatcgttcttcggtgctccttcc 163
>RF01911;MIR2118;AAAA02013919.1/25848-26037 39946:Oryza sativa
Indica Group
Length = 190
Score = 48.1 bits (24), Expect = 4e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 9 gggaagaggaagaacgagagggttcaatagcagtgggaatgggaacatggaggaaagcat 68
|||||||||||||| |||||| | ||| || ||| ||| ||||||||| ||||||||
Sbjct: 4 gggaagaggaagaaagagaggctccaagagtagtaggactgggaacatatgagaaagcat 63
Query: 69 gagctcta 76
||||||||
Sbjct: 64 gagctcta 71
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 105 tgttttcctgatgcctcccattcctattgttcttgg 140
||||||| |||||||||||||||||| ||||||||
Sbjct: 130 tgttttctcgatgcctcccattcctatcgttcttgg 165
>RF01911;MIR2118;AAAA02013919.1/12709-12863 39946:Oryza sativa
Indica Group
Length = 155
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tgggaatgggaacatggaggaaa 64
|||||||||||||||||||||||
Sbjct: 37 tgggaatgggaacatggaggaaa 59
