miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;AL606706.3/95698-95530 39947:Oryza sativa Japonica
Group
Length = 169
Score = 311 bits (157), Expect = 2e-84
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaagagaggatctcagaaatgtaggaatgagaacatgaaggaaagtcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggaagaggaagaaagagaggatctcagaaatgtaggaatgagaacatgaaggaaagtcta 64
Query: 61 agagctaatgtctcctctacattggaggtcgagacttagtttcatgttttcctgatgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 agagctaatgtctcctctacattggaggtcgagacttagtttcatgttttcctgatgcct 124
Query: 121 ctcattcctatggttctagggtgctccttcctcttcc 157
|||||||||||||||||||||||||||||||||||||
Sbjct: 125 ctcattcctatggttctagggtgctccttcctcttcc 161
>RF01911;MIR2118;ABXC01004282.1/24832-24688 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 75.8 bits (38), Expect = 2e-13
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 104 atgttttcctgatgcctctcattcctatggttctagggtgctccttcctcttcc 157
||||||||||| ||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 84 atgttttcctgttgcctctcattcctacggttcttaggtgctccttcctcttcc 137
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 35 ggaatgagaacatgaaggaaag 56
||||||||||||||||||||||
Sbjct: 39 ggaatgagaacatgaaggaaag 60
>RF01911;MIR2118;ABXC01004283.1/14206-14032 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 73.8 bits (37), Expect = 6e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 109 ttcctgatgcctctcattcctatggttctagggtgctccttcctcttcc 157
||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 119 ttcctgatgcctcccattcctatggttcttaggtgctccttcctcttcc 167
>RF01911;MIR2118;AACV01009812.1/23383-23542 39947:Oryza sativa
Japonica Group
Length = 160
Score = 73.8 bits (37), Expect = 6e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 105 tgttttcctgatgcctctcattcctatggttctagggtgctccttcctcttcc 157
||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||
Sbjct: 100 tgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcc 152
>RF01911;MIR2118;ABXC01004282.1/25056-24902 4558:Sorghum bicolor
(sorghum)
Length = 155
Score = 65.9 bits (33), Expect = 2e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 105 tgttttcctgatgcctctcattcctatggttctagggtgctccttcctcttcc 157
||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 95 tgttttcctgatgcctcccattcctacagttcttaggtgctccttcctcttcc 147
>RF01911;MIR2118;AL606706.3/88345-88174 39947:Oryza sativa Japonica
Group
Length = 172
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctctcattcctatggttctagggtgctccttcctcttcc 157
|||||| |||||||| ||||||||| ||||| ||||||||||||||||||
Sbjct: 114 ttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttcc 164
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 60.0 bits (30), Expect = 9e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctctcattcctatggttctagggtgctccttcctcttcc 157
||||||| |||||| ||||||||| ||||| ||||||||||||||||||
Sbjct: 118 tttcctggtgcctcccattcctattgttcttaggtgctccttcctcttcc 167
>RF01911;MIR2118;AP008210.1/21658799-21658648 39947:Oryza sativa
Japonica Group
Length = 152
Score = 60.0 bits (30), Expect = 9e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctctcattcctatggttctagggtgctccttcctcttcc 157
|||||| ||||||| ||||||||| ||||| ||||||||||||||||||
Sbjct: 95 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttcc 144
>RF01911;MIR2118;AL606706.3/90746-90578 39947:Oryza sativa Japonica
Group
Length = 169
Score = 58.0 bits (29), Expect = 4e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 105 tgttttcctgatgcctctcattcctatggttctagggtgctccttcctcttcc 157
||||||||||||||||| ||| ||||| ||||| | ||||||||||||||||
Sbjct: 109 tgttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttcc 161
>RF01911;MIR2118;AP008210.1/21663107-21662944 39947:Oryza sativa
Japonica Group
Length = 164
Score = 58.0 bits (29), Expect = 4e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctctcattcctatggttctagggtgctccttcctctt 155
||||||||||||||| ||||||||| ||||| ||||||| ||||||||
Sbjct: 106 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctctt 154
>RF01911;MIR2118;AP008217.1/7727087-7726916 39947:Oryza sativa
Japonica Group
Length = 172
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 114 gatgcctctcattcctatggttctagggtgctccttcctcttcc 157
|||||||| ||||||||| ||||| ||||||||||||||||||
Sbjct: 121 gatgcctcccattcctatcgttcttaggtgctccttcctcttcc 164
>RF01911;MIR2118;ABXC01004286.1/22135-21991 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 54.0 bits (27), Expect = 6e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 109 ttcctgatgcctctcattcctatggttctagggtgctccttcctctt 155
||||||||||||| ||| ||||| ||||| ||||||||||||||||
Sbjct: 89 ttcctgatgcctcccatgcctattgttcttaggtgctccttcctctt 135
>RF01911;MIR2118;ABXC01004285.1/25916-25740 4558:Sorghum bicolor
(sorghum)
Length = 177
Score = 50.1 bits (25), Expect = 9e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 109 ttcctgatgcctctcattcctatggttctagggtgctccttcctcttcc 157
|||||| || ||||||||||||||||||| ||| ||||||||| ||||
Sbjct: 121 ttcctggtgtctctcattcctatggttcttaggttctccttccttttcc 169
>RF01911;MIR2118;AP008210.1/21651167-21650991 39947:Oryza sativa
Japonica Group
Length = 177
Score = 50.1 bits (25), Expect = 9e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 105 tgttttcctgatgcctctcattcctatggttctagggtgctccttcctc 153
|||||||| ||||||| |||| ||||| ||||| ||||||||||||||
Sbjct: 117 tgttttcccgatgcctgtcatgcctatcgttcttcggtgctccttcctc 165
>RF01911;MIR2118;ABXC01004285.1/25657-25493 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctctcattcctat 131
||||||||||||||||||||||||
Sbjct: 108 tttcctgatgcctctcattcctat 131
>RF01911;MIR2118;ABXC01004282.1/27623-27465 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 115 atgcctctcattcctatggttctagggtgctccttcctcttcc 157
||||||| ||||||||| ||||| ||| ||||||||||||||
Sbjct: 109 atgcctcccattcctatcgttcttaggttctccttcctcttcc 151
>RF01911;MIR2118;ABXC01004283.1/13954-13790 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctctcattcctatggttct 137
||||| |||||||||||||||||| |||||
Sbjct: 108 tttcccgatgcctctcattcctatagttct 137
