miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;AL606706.3/95450-95277 39947:Oryza sativa Japonica
Group
Length = 174
Score = 345 bits (174), Expect = 1e-94
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 5 gtaaggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtaaggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaag 60
Query: 65 cctacagcgtctttctcgtccactagaagtggggggtaaagataatgtttttgtgttttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctacagcgtctttctcgtccactagaagtggggggtaaagataatgtttttgtgttttc 120
Query: 125 ctagtgcctcccattcctattgtccttagatactccttcctcttcctttcagct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctagtgcctcccattcctattgtccttagatactccttcctcttcctttcagct 174
>RF01911;MIR2118;AACV01009812.1/17181-17352 39947:Oryza sativa
Japonica Group
Length = 172
Score = 139 bits (70), Expect = 1e-32
Identities = 144/166 (86%), Gaps = 2/166 (1%)
Strand = Plus / Plus
Query: 8 aggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaagcct 67
|||||||||||||||||||||||||||| || | ||||||| |||||| ||||||||||
Sbjct: 4 aggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaagcct 63
Query: 68 acagcgtctttctcgtccactagaagtggggggtaaagataatgtttttgtgttttccta 127
|||| | ||||| |||||||||| | |||| | ||||||| |||||||||||||||
Sbjct: 64 acagtat-tttcttctccactagaattagggg-tggagataattcttttgtgttttccta 121
Query: 128 gtgcctcccattcctattgtccttagatactccttcctcttccttt 173
||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 122 atgcttcccattcctattgttgttagatactccttcctcttccttt 167
>RF01911;MIR2118;AP008210.1/21658799-21658648 39947:Oryza sativa
Japonica Group
Length = 152
Score = 73.8 bits (37), Expect = 7e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 121 tttcctagtgcctcccattcctattgtccttagatactccttcctcttccttt 173
||||||| ||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct: 95 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttccttt 147
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 67.9 bits (34), Expect = 5e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 121 tttcctagtgcctcccattcctattgtccttagatactccttcctcttcc 170
|||||| |||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 118 tttcctggtgcctcccattcctattgttcttaggtgctccttcctcttcc 167
Score = 54.0 bits (27), Expect = 7e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 7 aaggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaagc 65
|||||||||||||||| | |||||||| ||| | ||||||||||||| |||||||||
Sbjct: 3 aaggaagaggaagaaagagtctgtctaagagcagtgggaatgggaacatggaggaaagc 61
>RF01911;MIR2118;AL606706.3/88345-88174 39947:Oryza sativa Japonica
Group
Length = 172
Score = 67.9 bits (34), Expect = 5e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 129 tgcctcccattcctattgtccttagatactccttcctcttcctttcagct 178
|||||||||||||||| || ||||| | ||||||||||||||||||||||
Sbjct: 123 tgcctcccattcctatcgttcttaggtgctccttcctcttcctttcagct 172
>RF01911;MIR2118;AP008217.1/7727087-7726916 39947:Oryza sativa
Japonica Group
Length = 172
Score = 67.9 bits (34), Expect = 5e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 129 tgcctcccattcctattgtccttagatactccttcctcttcctttcagct 178
|||||||||||||||| || ||||| | ||||||||||||||||||||||
Sbjct: 123 tgcctcccattcctatcgttcttaggtgctccttcctcttcctttcagct 172
>RF01911;MIR2118;AL606706.3/90746-90578 39947:Oryza sativa Japonica
Group
Length = 169
Score = 63.9 bits (32), Expect = 7e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 118 tgttttcctagtgcctcccattcctattgtccttagatactccttcctcttccttt 173
||||||||| |||||||||| |||||||| || |||| |||||||||||||||||
Sbjct: 109 tgttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttt 164
>RF01911;MIR2118;AACV01009812.1/23383-23542 39947:Oryza sativa
Japonica Group
Length = 160
Score = 61.9 bits (31), Expect = 3e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 114 tttgtgttttcctagtgcctcccattcctattgtccttagatactccttcctcttcctt 172
||||||||||||| ||||||||||||||||||| ||| | | |||||||| |||||||
Sbjct: 96 tttgtgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 154
>RF01911;MIR2118;ABXC01004283.1/14206-14032 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 60.0 bits (30), Expect = 1e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 129 tgcctcccattcctattgtccttagatactccttcctcttcctttc 174
|||||||||||||||| || ||||| | ||||||||||||||||||
Sbjct: 126 tgcctcccattcctatggttcttaggtgctccttcctcttcctttc 171
>RF01911;MIR2118;AAAA02013919.1/23719-23885 39946:Oryza sativa
Indica Group
Length = 167
Score = 60.0 bits (30), Expect = 1e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 129 tgcctcccattcctattgtccttagatactccttcctcttcc 170
||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 118 tgcctcccaagcctattgtccttaggtactccttcctcttcc 159
>RF01911;MIR2118;ABXC01004282.1/25056-24902 4558:Sorghum bicolor
(sorghum)
Length = 155
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 117 gtgttttcctagtgcctcccattcctattgtccttagatactccttcctcttccttt 173
|||||||||| ||||||||||||||| || ||||| | |||||||||||||||||
Sbjct: 94 gtgttttcctgatgcctcccattcctacagttcttaggtgctccttcctcttccttt 150
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa
Indica Group
Length = 172
Score = 58.0 bits (29), Expect = 4e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 8 aggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaagcct 67
||||||||||||||| ||| | ||||| ||| | ||||||||||||| |||||||||||
Sbjct: 4 aggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaaagcct 63
Query: 68 a 68
|
Sbjct: 64 a 64
Score = 52.0 bits (26), Expect = 3e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 129 tgcctcccattcctattgtccttagatactccttcctcttcctttcagct 178
|||||||||||||||| || |||| ||| |||||||||||||||||||
Sbjct: 123 tgcctcccattcctatcgttcttaagcacttcttcctcttcctttcagct 172
>RF01911;MIR2118;ABXC01004282.1/24617-24453 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 54.0 bits (27), Expect = 7e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 8 aggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaagcc 66
||||||||||||||| ||||||||||| ||| | || |||||||||| ||||||||||
Sbjct: 4 aggaagaggaagaaac-gagtgtctaagagcagtgggcatgggaacatggaggaaagcc 61
>RF01911;MIR2118;AP008210.1/21663107-21662944 39947:Oryza sativa
Japonica Group
Length = 164
Score = 54.0 bits (27), Expect = 7e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 120 ttttcctagtgcctcccattcctattgtccttagatactccttcctcttcctttcagct 178
||||||| |||||||||||||||| || ||||| | ||| |||||||| |||||||||
Sbjct: 106 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttactttcagct 164
>RF01911;MIR2118;ABXC01004282.1/27623-27465 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 52.0 bits (26), Expect = 3e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 8 aggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaagc 65
||||||||||||||| || ||||||| ||||| ||||||||| ||| |||||||||
Sbjct: 4 aggaagaggaagaaagagatagtctaagagcaatgggaatgggagcatggaggaaagc 61
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 129 tgcctcccattcctattgtccttagatactccttcctcttcc 170
|||||||||||||||| || ||||| | ||||||||||||||
Sbjct: 110 tgcctcccattcctatcgttcttaggttctccttcctcttcc 151
>RF01911;MIR2118;ABXC01004283.1/17551-17393 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 50.1 bits (25), Expect = 1e-05
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 129 tgcctcccattcctattgtccttagatactccttcctcttccttt 173
||||||||||||||||| | |||| ||||||||||||||||||
Sbjct: 110 tgcctcccattcctattattcttaagcactccttcctcttccttt 154
>RF01911;MIR2118;ABXC01004286.1/22135-21991 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 50.1 bits (25), Expect = 1e-05
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 129 tgcctcccattcctattgtccttagatactccttcctcttccttt 173
|||||||||| |||||||| ||||| | |||||||||||| ||||
Sbjct: 96 tgcctcccatgcctattgttcttaggtgctccttcctcttgcttt 140
>RF01911;MIR2118;ABXC01004282.1/24832-24688 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 48.1 bits (24), Expect = 4e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 118 tgttttcctagtgcctcccattcctattgtccttagatactccttcctcttccttt 173
||||||||| |||||| |||||||| || ||||| | |||||||||||||||||
Sbjct: 85 tgttttcctgttgcctctcattcctacggttcttaggtgctccttcctcttccttt 140
>RF01911;MIR2118;ABXC01004283.1/13954-13790 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 46.1 bits (23), Expect = 2e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 8 aggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaagcc 66
||||||||||||||| ||| || |||| ||| | |||||| ||| |||||||||||||
Sbjct: 4 aggaagaggaagaaacagagggtataagagcagtgggaatgagaatattgaggaaagcc 62
>RF01911;MIR2118;ABXC01004282.1/27391-27234 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 129 tgcctcccattcctattgtccttagatactccttcctcttcct 171
|||||||||| |||||||| ||||| | ||||||||||||||
Sbjct: 109 tgcctcccatgcctattgttcttaggtgttccttcctcttcct 151
>RF01911;MIR2118;ABXC01004286.1/22374-22204 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 ggaatgggaacattgaggaaagccta 68
||||||||||||| ||||||||||||
Sbjct: 39 ggaatgggaacatggaggaaagccta 64
>RF01911;MIR2118;AAAA02013919.1/20837-21004 39946:Oryza sativa
Indica Group
Length = 168
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 149 cttagatactccttcctcttcctttcagct 178
||||| ||||||||||||||||||| ||||
Sbjct: 139 cttaggtactccttcctcttccttttagct 168
