miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;AP008210.1/21663107-21662944 39947:Oryza sativa
Japonica Group
Length = 164
Score = 325 bits (164), Expect = 1e-88
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 2 gtgagccaggaagaggaagagagactctaagagcagtaggaatgggaacatgaaggaaag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgagccaggaagaggaagagagactctaagagcagtaggaatgggaacatgaaggaaag 60
Query: 62 ccaaattaagctctaacctctggtattggagatttggtctgatgattttcctgatgcctc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccaaattaagctctaacctctggtattggagatttggtctgatgattttcctgatgcctc 120
Query: 122 ccattcctatagttcttaggtgctcgttcctcttactttcagct 165
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccattcctatagttcttaggtgctcgttcctcttactttcagct 164
>RF01911;MIR2118;AP008210.1/21667363-21667201 39947:Oryza sativa
Japonica Group
Length = 163
Score = 198 bits (100), Expect = 2e-50
Identities = 146/160 (91%), Gaps = 1/160 (0%)
Strand = Plus / Plus
Query: 2 gtgagccaggaagaggaagagagactctaagagcagtaggaatgggaacatgaaggaaag 61
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgagccaggaagaggat-agagactctaagagcagtaggaatgggaacatgaaggaaag 59
Query: 62 ccaaattaagctctaacctctggtattggagatttggtctgatgattttcctgatgcctc 121
||||| |||||||||| |||| ||||||||||||| | | |||||||||||||||||
Sbjct: 60 ccaaaccaagctctaactcctggagttggagatttggtataacgattttcctgatgcctc 119
Query: 122 ccattcctatagttcttaggtgctcgttcctcttactttc 161
||||||||| ||||||||||| || |||||||||||||||
Sbjct: 120 ccattcctacagttcttaggtccttgttcctcttactttc 159
>RF01911;MIR2118;AL606706.3/88345-88174 39947:Oryza sativa Japonica
Group
Length = 172
Score = 85.7 bits (43), Expect = 2e-16
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttactttcagct 165
|||||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct: 114 ttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttcctttcagct 172
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 tctaagagcagtaggaatgggaacat 52
|||||||||||| |||||||||||||
Sbjct: 26 tctaagagcagtgggaatgggaacat 51
>RF01911;MIR2118;ABXC01004282.1/25056-24902 4558:Sorghum bicolor
(sorghum)
Length = 155
Score = 83.8 bits (42), Expect = 7e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
|||||||||||||||||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 97 ttttcctgatgcctcccattcctacagttcttaggtgctccttcctcttccttt 150
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 28 ctaagagcagtaggaatgggaacatgaaggaaagc 62
|||||||| || |||||||||||||| ||||||||
Sbjct: 27 ctaagagcggtgggaatgggaacatggaggaaagc 61
>RF01911;MIR2118;ABXC01004283.1/14206-14032 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 81.8 bits (41), Expect = 3e-15
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 109 ttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttactttc 161
||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 119 ttcctgatgcctcccattcctatggttcttaggtgctccttcctcttcctttc 171
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 28 ctaagagcagtaggaatgggaacatgaaggaa 59
||||||||| ||||||||||||||||||||||
Sbjct: 27 ctaagagcaataggaatgggaacatgaaggaa 58
>RF01911;MIR2118;AP008217.1/7727087-7726916 39947:Oryza sativa
Japonica Group
Length = 172
Score = 79.8 bits (40), Expect = 1e-14
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 114 gatgcctcccattcctatagttcttaggtgctcgttcctcttactttcagct 165
|||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct: 121 gatgcctcccattcctatcgttcttaggtgctccttcctcttcctttcagct 172
>RF01911;MIR2118;ABXC01004283.1/20134-19984 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 73.8 bits (37), Expect = 7e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 2 gtgagccaggaagaggaagagagactctaagagcagtaggaatgggaacatgaaggaaag 61
|||||||||||| ||||||| || |||||||||| ||||||| ||||||||||||||||
Sbjct: 1 gtgagccaggaaaaggaagaaagtttctaagagcactaggaataggaacatgaaggaaag 60
Query: 62 c 62
|
Sbjct: 61 c 61
>RF01911;MIR2118;AP008210.1/21658799-21658648 39947:Oryza sativa
Japonica Group
Length = 152
Score = 73.8 bits (37), Expect = 7e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
|||||| ||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 95 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttccttt 147
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 27 tctaagagcagtaggaatgggaacatgaaggaaag 61
||||||||| ||||||||||||||||| |||||||
Sbjct: 24 tctaagagctgtaggaatgggaacatggaggaaag 58
>RF01911;MIR2118;ABXC01004286.1/22135-21991 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 71.9 bits (36), Expect = 3e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 109 ttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
||||||||||||||||| ||||| |||||||||||||| |||||||| ||||
Sbjct: 89 ttcctgatgcctcccatgcctattgttcttaggtgctccttcctcttgcttt 140
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 71.9 bits (36), Expect = 3e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctcccattcctatagttcttaggtgctcgttcctctt 155
||||||| |||||||||||||||| |||||||||||||| ||||||||
Sbjct: 118 tttcctggtgcctcccattcctattgttcttaggtgctccttcctctt 165
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 27 tctaagagcagtaggaatgggaacatgaaggaaagc 62
|||||||||||| |||||||||||||| ||||||||
Sbjct: 26 tctaagagcagtgggaatgggaacatggaggaaagc 61
>RF01911;MIR2118;ABXC01004286.1/22374-22204 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 67.9 bits (34), Expect = 4e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 10 ggaagaggaagagagactctaagagcagtaggaatgggaacatgaaggaaagcc 63
||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 9 ggaagaggaagagagggcctaagagcagtgggaatgggaacatggaggaaagcc 62
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 115 atgcctcccattcctatagttcttaggtgctc 146
||||||||||||||||| ||||||| ||||||
Sbjct: 121 atgcctcccattcctattgttcttaagtgctc 152
>RF01911;MIR2118;AACV01009812.1/23383-23542 39947:Oryza sativa
Japonica Group
Length = 160
Score = 65.9 bits (33), Expect = 2e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcc 151
||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct: 102 ttttcctgatgcctcccattcctattgttcttgggtgctccttcc 146
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 33 agcagtaggaatgggaacatgaaggaaagc 62
|||||| |||||||||||||| ||||||||
Sbjct: 32 agcagtgggaatgggaacatggaggaaagc 61
>RF01911;MIR2118;ABXC01004282.1/24832-24688 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 60.0 bits (30), Expect = 1e-08
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
|||||||| |||||| |||||||| |||||||||||||| |||||||| ||||
Sbjct: 87 ttttcctgttgcctctcattcctacggttcttaggtgctccttcctcttccttt 140
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 27 tctaagagcagtaggaatgggaacatgaaggaaagc 62
|||||||||||| |||||| ||||||||||||||||
Sbjct: 26 tctaagagcagtgggaatgagaacatgaaggaaagc 61
>RF01911;MIR2118;AL606706.3/90746-90578 39947:Oryza sativa Japonica
Group
Length = 169
Score = 60.0 bits (30), Expect = 1e-08
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
||||||||||||||||||| ||||| ||||| || ||||| |||||||| ||||
Sbjct: 111 ttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttt 164
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa
Indica Group
Length = 172
Score = 60.0 bits (30), Expect = 1e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 18 aagagagactctaagagcagtaggaatgggaacatgaaggaaagcc 63
|||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 17 aagagagagcctaagagcagtgggaatgggaacatggaggaaagcc 62
Score = 54.0 bits (27), Expect = 6e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttactttcagct 165
|||||| |||||||||||||||||| ||||||| | || |||||||| |||||||||
Sbjct: 114 ttttcccgatgcctcccattcctatcgttcttaagcacttcttcctcttcctttcagct 172
>RF01911;MIR2118;AL606706.3/95698-95530 39947:Oryza sativa Japonica
Group
Length = 169
Score = 60.0 bits (30), Expect = 1e-08
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
||||||||||||||| ||||||||| ||||| ||||||| |||||||| ||||
Sbjct: 111 ttttcctgatgcctctcattcctatggttctagggtgctccttcctcttccttt 164
>RF01911;MIR2118;ABXC01004286.1/17945-17773 4558:Sorghum bicolor
(sorghum)
Length = 173
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 28 ctaagagcagtaggaatgggaacatgaaggaaagcca 64
||||||||||| |||||||||||||| ||||||||||
Sbjct: 27 ctaagagcagtgggaatgggaacatggaggaaagcca 63
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctcccattcctatagttctta 139
||||||| |||||||||||||||| |||||||
Sbjct: 116 tttcctggtgcctcccattcctatcgttctta 147
>RF01911;MIR2118;ABXC01004282.1/27623-27465 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 115 atgcctcccattcctatagttcttaggtgctcgttcctctt 155
||||||||||||||||| |||||||||| ||| ||||||||
Sbjct: 109 atgcctcccattcctatcgttcttaggttctccttcctctt 149
>RF01911;MIR2118;ABXC01004282.1/24617-24453 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 27 tctaagagcagtaggaatgggaacatgaaggaaagccaaa 66
|||||||||||| || ||||||||||| ||||||||||||
Sbjct: 25 tctaagagcagtgggcatgggaacatggaggaaagccaaa 64
>RF01911;MIR2118;ABXC01004286.1/20347-20177 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 28 ctaagagcagtaggaatgggaacatgaaggaaagcc 63
|||||| ||||||||||||||||||| |||||||||
Sbjct: 27 ctaagaacagtaggaatgggaacatggaggaaagcc 62
>RF01911;MIR2118;AL606706.3/95450-95277 39947:Oryza sativa Japonica
Group
Length = 174
Score = 54.0 bits (27), Expect = 6e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttactttcagct 165
||||||| |||||||||||||||| || ||||| | ||| |||||||| |||||||||
Sbjct: 116 ttttcctagtgcctcccattcctattgtccttagatactccttcctcttcctttcagct 174
>RF01911;MIR2118;ABXC01004283.1/19912-19741 4558:Sorghum bicolor
(sorghum)
Length = 172
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 31 agagcagtaggaatgggaacatgaaggaaagccaaatt 68
|||||||| |||||||||||||| ||||||| ||||||
Sbjct: 30 agagcagtgggaatgggaacatggaggaaaggcaaatt 67
>RF01911;MIR2118;AACV01009812.1/26461-26632 39947:Oryza sativa
Japonica Group
Length = 172
Score = 52.0 bits (26), Expect = 3e-06
Identities = 49/56 (87%), Gaps = 3/56 (5%)
Strand = Plus / Plus
Query: 8 caggaagaggaaga---gagactctaagagcagtaggaatgggaacatgaaggaaa 60
|||||||||||||| |||| ||||||||||| ||| ||||||||||| ||||||
Sbjct: 3 caggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaa 58
>RF01911;MIR2118;ABXC01004282.1/27391-27234 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 115 atgcctcccattcctatagttcttaggtgctcgttcctctt 155
||||||||||| ||||| ||||||||||| || ||||||||
Sbjct: 108 atgcctcccatgcctattgttcttaggtgttccttcctctt 148
>RF01911;MIR2118;AL606706.3/87890-87721 39947:Oryza sativa
Japonica Group
Length = 170
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 28 ctaagagcagtaggaatgggaacatgaaggaaagcc 63
||||||||| |||| ||||||||||| |||||||||
Sbjct: 27 ctaagagcattaggcatgggaacatggaggaaagcc 62
>RF01911;MIR2118;ABXC01004286.1/17751-17622 4558:Sorghum bicolor
(sorghum)
Length = 130
Score = 46.1 bits (23), Expect = 2e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 109 ttcctgatgcctcccattcctatagttcttaggtgctcgttcctctt 155
|||||||| |||| ||||||| | |||||||| |||||||||||||
Sbjct: 74 ttcctgatacctctcattcctgtcattcttaggcgctcgttcctctt 120
>RF01911;MIR2118;ABXC01004283.1/13954-13790 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctcccattcctatagttctt 138
||||| |||||||| ||||||||||||||||
Sbjct: 108 tttcccgatgcctctcattcctatagttctt 138
>RF01911;MIR2118;AACV01009812.1/12630-12796 39947:Oryza sativa
Japonica Group
Length = 167
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 110 tcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
||||||||||||||| ||||| |||| | ||||||| |||||||| ||||
Sbjct: 112 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttccttt 162
>RF01911;MIR2118;AAAA02013919.1/23719-23885 39946:Oryza sativa
Indica Group
Length = 167
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 28 ctaagagcagtaggaatgggaacatgaaggaaagc 62
||||||||||| || ||||||||||| ||||||||
Sbjct: 26 ctaagagcagtgggcatgggaacatggaggaaagc 60
>RF01911;MIR2118;AAAA02013919.1/20837-21004 39946:Oryza sativa
Indica Group
Length = 168
Score = 44.1 bits (22), Expect = 6e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 18 aagagagactctaagagcagtaggaatgggaacatgaaggaaagcc 63
||||||||||||||||| | ||||| |||||||| |||||||||
Sbjct: 17 aagagagactctaagagtgatgggaataggaacatggaggaaagcc 62
>RF01911;MIR2118;AACV01009812.1/17181-17352 39947:Oryza sativa
Japonica Group
Length = 172
Score = 44.1 bits (22), Expect = 6e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
||||||| |||| |||||||||||| ||| |||| | ||| |||||||| ||||
Sbjct: 114 ttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttt 167
