miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;AL606706.3/95698-95530 39947:Oryza sativa Japonica
Group
Length = 169
Score = 202 bits (102), Expect = 1e-51
Identities = 154/170 (90%), Gaps = 1/170 (0%)
Strand = Plus / Plus
Query: 5 gccaggaagaggaagaaagagagtatctcagaattgtgggaatgagaccatgaaggaaag 64
||||||||||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||
Sbjct: 1 gccaggaagaggaagaaagagaggatctcagaaatgtaggaatgagaacatgaaggaaag 60
Query: 65 cctaagctctattgtcccctctagtattggaggtggaaacttagtttcatgttttcctga 124
||||| ||| |||| |||||| ||||||||| || ||||||||||||||||||||||
Sbjct: 61 tctaagagctaatgtctcctctac-attggaggtcgagacttagtttcatgttttcctga 119
Query: 125 tgcctctcattcctattgttcttaggtgctccttcctcttccttttggct 174
|||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 120 tgcctctcattcctatggttctagggtgctccttcctcttccttttggct 169
>RF01911;MIR2118;ABXC01004282.1/24832-24688 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 89.7 bits (45), Expect = 1e-17
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 113 atgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttt 169
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 84 atgttttcctgttgcctctcattcctacggttcttaggtgctccttcctcttccttt 140
Score = 52.0 bits (26), Expect = 3e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 8 aggaagaggaagaaagagagtatctcagaattgtgggaatgagaccatgaaggaaagc 65
|||||| |||||||||||| | ||| ||| |||||||||||| |||||||||||||
Sbjct: 4 aggaagtggaagaaagagaatgtctaagagcagtgggaatgagaacatgaaggaaagc 61
>RF01911;MIR2118;ABXC01004286.1/22135-21991 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 89.7 bits (45), Expect = 1e-17
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 118 ttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttggct 174
||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 89 ttcctgatgcctcccatgcctattgttcttaggtgctccttcctcttgcttttggct 145
>RF01911;MIR2118;AP008210.1/21658799-21658648 39947:Oryza sativa
Japonica Group
Length = 152
Score = 89.7 bits (45), Expect = 1e-17
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 117 tttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttt 169
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 95 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttccttt 147
>RF01911;MIR2118;ABXC01004282.1/25056-24902 4558:Sorghum bicolor
(sorghum)
Length = 155
Score = 87.7 bits (44), Expect = 5e-17
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 114 tgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttt 169
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 95 tgttttcctgatgcctcccattcctacagttcttaggtgctccttcctcttccttt 150
Score = 50.1 bits (25), Expect = 1e-05
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 5 gccaggaagaggaagaaagagagtatctcagaattgtgggaatgagaccatgaaggaaag 64
|||||||||||||||||||||| || || ||| ||||||||| || |||| |||||||
Sbjct: 1 gccaggaagaggaagaaagagaatacctaagagcggtgggaatgggaacatggaggaaag 60
Query: 65 c 65
|
Sbjct: 61 c 61
>RF01911;MIR2118;ABXC01004283.1/14206-14032 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 87.7 bits (44), Expect = 5e-17
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 118 ttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttt 169
||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 119 ttcctgatgcctcccattcctatggttcttaggtgctccttcctcttccttt 170
>RF01911;MIR2118;AL606706.3/90746-90578 39947:Oryza sativa Japonica
Group
Length = 169
Score = 85.7 bits (43), Expect = 2e-16
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 114 tgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttgg 172
||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 109 tgttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttttgg 167
>RF01911;MIR2118;AACV01009812.1/23383-23542 39947:Oryza sativa
Japonica Group
Length = 160
Score = 85.7 bits (43), Expect = 2e-16
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 114 tgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttcctt 168
||||||||||||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct: 100 tgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 154
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 83.8 bits (42), Expect = 7e-16
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 117 tttcctgatgcctctcattcctattgttcttaggtgctccttcctcttcc 166
||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 118 tttcctggtgcctcccattcctattgttcttaggtgctccttcctcttcc 167
>RF01911;MIR2118;AL606706.3/88345-88174 39947:Oryza sativa Japonica
Group
Length = 172
Score = 83.8 bits (42), Expect = 7e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 116 ttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttt 169
|||||| |||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 114 ttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttccttt 167
>RF01911;MIR2118;AP008217.1/7727087-7726916 39947:Oryza sativa
Japonica Group
Length = 172
Score = 77.8 bits (39), Expect = 5e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 123 gatgcctctcattcctattgttcttaggtgctccttcctcttccttt 169
|||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 121 gatgcctcccattcctatcgttcttaggtgctccttcctcttccttt 167
>RF01911;MIR2118;AP008210.1/21663107-21662944 39947:Oryza sativa
Japonica Group
Length = 164
Score = 75.8 bits (38), Expect = 2e-13
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 116 ttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttt 169
||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||
Sbjct: 106 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 159
>RF01911;MIR2118;ABXC01004285.1/25657-25493 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 73.8 bits (37), Expect = 7e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 117 tttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttt 169
|||||||||||||||||||||||||||| ||| | |||||||||| |||||||
Sbjct: 108 tttcctgatgcctctcattcctattgtttttacgcgctccttccttttccttt 160
>RF01911;MIR2118;AACV01009812.1/17181-17352 39947:Oryza sativa
Japonica Group
Length = 172
Score = 73.8 bits (37), Expect = 7e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 114 tgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttggc 173
||||||||| |||| || ||||||||||||| |||| | |||||||||||||||||||||
Sbjct: 112 tgttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttttggc 171
Query: 174 t 174
|
Sbjct: 172 t 172
>RF01911;MIR2118;ABXC01004286.1/22374-22204 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 69.9 bits (35), Expect = 1e-11
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 124 atgcctctcattcctattgttcttaggtgctccttcctcttccttttggct 174
||||||| ||||||||||||||||| ||||||| |||| ||||||||||||
Sbjct: 121 atgcctcccattcctattgttcttaagtgctccatccttttccttttggct 171
>RF01911;MIR2118;ABXC01004282.1/24617-24453 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 67.9 bits (34), Expect = 4e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 117 tttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttggct 174
||||| |||||||| ||| |||||||||||||| | |||||||| |||||||||||||
Sbjct: 108 tttcccgatgcctcccatgcctattgttcttagttactccttccccttccttttggct 165
>RF01911;MIR2118;AAAA02013919.1/23719-23885 39946:Oryza sativa
Indica Group
Length = 167
Score = 67.9 bits (34), Expect = 4e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 113 atgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttgg 172
||||||||| |||||||| || |||||||| ||||||| |||||||||||||| |||||
Sbjct: 106 atgttttcccgatgcctcccaagcctattgtccttaggtactccttcctcttccctttgg 165
Query: 173 ct 174
||
Sbjct: 166 ct 167
>RF01911;MIR2118;AACV01009812.1/12630-12796 39947:Oryza sativa
Japonica Group
Length = 167
Score = 65.9 bits (33), Expect = 2e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 119 tcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttg 171
|||||||||||| || |||||||||| | |||||||||||||||||||||||
Sbjct: 112 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttccttttg 164
>RF01911;MIR2118;ABXC01004282.1/27391-27234 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 63.9 bits (32), Expect = 7e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 124 atgcctctcattcctattgttcttaggtgctccttcctcttcct 167
||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct: 108 atgcctcccatgcctattgttcttaggtgttccttcctcttcct 151
>RF01911;MIR2118;AL606706.3/95450-95277 39947:Oryza sativa Japonica
Group
Length = 174
Score = 63.9 bits (32), Expect = 7e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 114 tgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttt 169
||||||||| |||||| |||||||||||| ||||| | |||||||||||||||||
Sbjct: 114 tgttttcctagtgcctcccattcctattgtccttagatactccttcctcttccttt 169
>RF01911;MIR2118;ABXC01004282.1/27623-27465 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 61.9 bits (31), Expect = 3e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 124 atgcctctcattcctattgttcttaggtgctccttcctcttcc 166
||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct: 109 atgcctcccattcctatcgttcttaggttctccttcctcttcc 151
>RF01911;MIR2118;ABXC01004285.1/25916-25740 4558:Sorghum bicolor
(sorghum)
Length = 177
Score = 61.9 bits (31), Expect = 3e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 118 ttcctgatgcctctcattcctattgttcttaggtgctccttcctcttcctt 168
|||||| || ||||||||||||| |||||||||| ||||||||| ||||||
Sbjct: 121 ttcctggtgtctctcattcctatggttcttaggttctccttccttttcctt 171
>RF01911;MIR2118;ABXC01004283.1/17320-17155 4558:Sorghum bicolor
(sorghum)
Length = 166
Score = 60.0 bits (30), Expect = 1e-08
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 117 tttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttggct 174
|||||| ||||||| ||| |||| ||||||| ||| ||||||||| ||||||||||||
Sbjct: 109 tttcctaatgcctcacatgcctactgttcttcggtcctccttccttttccttttggct 166
>RF01911;MIR2118;ABXC01004283.1/13954-13790 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 60.0 bits (30), Expect = 1e-08
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 117 tttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttggct 174
||||| |||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct: 108 tttcccgatgcctctcattcctatagttcttgcgccttccttcctcttccttttggct 165
>RF01911;MIR2118;AP008210.1/21651167-21650991 39947:Oryza sativa
Japonica Group
Length = 177
Score = 60.0 bits (30), Expect = 1e-08
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 114 tgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttcct 167
|||||||| ||||||| |||| ||||| |||||| |||||||||||||| ||||
Sbjct: 117 tgttttcccgatgcctgtcatgcctatcgttcttcggtgctccttcctcctcct 170
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa Indica
Group
Length = 172
Score = 60.0 bits (30), Expect = 1e-08
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 92 tggaggtggaaacttagtttcatgttttcctgatgcctctcattcctattgttcttaggt 151
|||||||||||| || |||| | |||||| |||||||| ||||||||| ||||||| |
Sbjct: 90 tggaggtggaaatttggtttggttttttcccgatgcctcccattcctatcgttcttaagc 149
Query: 152 gctccttcctcttccttt 169
|| ||||||||||||||
Sbjct: 150 acttcttcctcttccttt 167
Score = 50.1 bits (25), Expect = 1e-05
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 5 gccaggaagaggaagaaagagagtatctcagaattgtgggaatgagaccatgaaggaaag 64
||||||||||||||||||||||| || ||| ||||||||| || |||| |||||||
Sbjct: 1 gccaggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaaag 60
Query: 65 cctaa 69
|||||
Sbjct: 61 cctaa 65
>RF01911;MIR2118;ABXC01004283.1/17551-17393 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 56.0 bits (28), Expect = 2e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 123 gatgcctctcattcctattgttcttaggtgctccttcctcttcctttt 170
|||||||| |||||||||| |||||| | ||||||||||||||||||
Sbjct: 108 gatgcctcccattcctattattcttaagcactccttcctcttcctttt 155
>RF01911;MIR2118;AP008210.1/21667363-21667201 39947:Oryza sativa
Japonica Group
Length = 163
Score = 54.0 bits (27), Expect = 7e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 116 ttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttggct 174
||||||||||||||| |||||||| |||||||||| || |||||||| |||| ||||
Sbjct: 105 ttttcctgatgcctcccattcctacagttcttaggtccttgttcctcttactttcggct 163
>RF01911;MIR2118;ABXC01004282.1/22775-22606 4558:Sorghum bicolor
(sorghum)
Length = 170
Score = 52.0 bits (26), Expect = 3e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 124 atgcctctcattcctattgttcttaggtgctccttcctcttccttttggc 173
||||||| ||| ||||||||| |||| | |||||||| ||||||||||||
Sbjct: 120 atgcctcccatgcctattgttgttagtttctccttccccttccttttggc 169
>RF01911;MIR2118;AL606706.3/87890-87721 39947:Oryza sativa Japonica
Group
Length = 170
Score = 52.0 bits (26), Expect = 3e-06
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 114 tgttttcctgatgcctctcattcctattgttcttaggtgctcctt-cctcttccttttgg 172
|||||||| || |||| ||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 109 tgttttcccaatacctcccatgcctattgttctcaggtgttcctttcctcttccttttgg 168
Query: 173 ct 174
||
Sbjct: 169 ct 170
>RF01911;MIR2118;ABXC01004286.1/17751-17622 4558:Sorghum bicolor
(sorghum)
Length = 130
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 118 ttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttggct 174
|||||||| |||||||||||| | |||||||| |||| ||||||||| | ||||||
Sbjct: 74 ttcctgatacctctcattcctgtcattcttaggcgctcgttcctcttcttcttggct 130
>RF01911;MIR2118;ABXC01004283.1/20134-19984 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 108 gtttcatgttttcctgatgcctctcattcctattgttcttaggtgctccttcc 160
|||| |||||||||||||||||| ||||||| | |||||||| ||||||||
Sbjct: 85 gtttaatgttttcctgatgcctcctattcctaaggctcttaggttctccttcc 137
>RF01911;MIR2118;AAAA02013919.1/20837-21004 39946:Oryza sativa
Indica Group
Length = 168
Score = 48.1 bits (24), Expect = 4e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 115 gttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttcctttt 170
||||||| |||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct: 109 gttttcccgatgcctcctattcctaccaatcttaggtactccttcctcttcctttt 164
>RF01911;MIR2118;AAAA02013919.1/25848-26037 39946:Oryza sativa
Indica Group
Length = 190
Score = 44.1 bits (22), Expect = 6e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 113 atgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttcctttt 170
|||||||| |||||||| ||||||||| |||||| | |||||||||||||||||
Sbjct: 129 atgttttctcgatgcctcccattcctatcgttcttggaacttccttcctcttcctttt 186
