miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;AACV01009812.1/17181-17352 39947:Oryza sativa
Japonica Group
Length = 172
Score = 341 bits (172), Expect = 2e-93
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 6 gttaggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaag 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttaggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaag 60
Query: 66 cctacagtattttcttctccactagaattaggggtggagataattcttttgtgttttcct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctacagtattttcttctccactagaattaggggtggagataattcttttgtgttttcct 120
Query: 126 aatgcttcccattcctattgttgttagatactccttcctcttccttttggct 177
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatgcttcccattcctattgttgttagatactccttcctcttccttttggct 172
>RF01911;MIR2118;AL606706.3/95450-95277 39947:Oryza sativa Japonica
Group
Length = 174
Score = 139 bits (70), Expect = 1e-32
Identities = 144/166 (86%), Gaps = 2/166 (1%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaagcct 68
|||||||||||||||||||||||||||| || | ||||||| |||||| ||||||||||
Sbjct: 4 aggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaagcct 63
Query: 69 acagtat-tttcttctccactagaattagggg-tggagataattcttttgtgttttccta 126
|||| | ||||| |||||||||| | |||| | ||||||| |||||||||||||||
Sbjct: 64 acagcgtctttctcgtccactagaagtggggggtaaagataatgtttttgtgttttccta 123
Query: 127 atgcttcccattcctattgttgttagatactccttcctcttccttt 172
||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 124 gtgcctcccattcctattgtccttagatactccttcctcttccttt 169
>RF01911;MIR2118;AP008210.1/21658799-21658648 39947:Oryza sativa
Japonica Group
Length = 152
Score = 73.8 bits (37), Expect = 7e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 120 tttcctaatgcttcccattcctattgttgttagatactccttcctcttccttt 172
||||||||||| |||||||||||||||| |||| | |||||||||||||||||
Sbjct: 95 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttccttt 147
>RF01911;MIR2118;AL606706.3/90746-90578 39947:Oryza sativa Japonica
Group
Length = 169
Score = 69.9 bits (35), Expect = 1e-11
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 117 tgttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttttgg 175
||||||||| |||| |||||| ||||||||| | |||| ||||||||||||||||||||
Sbjct: 109 tgttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttttgg 167
>RF01911;MIR2118;ABXC01004282.1/22775-22606 4558:Sorghum bicolor
(sorghum)
Length = 170
Score = 65.9 bits (33), Expect = 2e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 120 tttcctaatgcttcccattcctattgttgttagatactccttcctcttccttttggc 176
||||| ||||| |||||| |||||||||||||| | |||||||| ||||||||||||
Sbjct: 113 tttcccaatgcctcccatgcctattgttgttagtttctccttccccttccttttggc 169
>RF01911;MIR2118;ABXC01004282.1/24617-24453 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 61.9 bits (31), Expect = 3e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 127 atgcttcccattcctattgttgttagatactccttcctcttccttttggct 177
|||| |||||| ||||||||| |||| |||||||||| |||||||||||||
Sbjct: 115 atgcctcccatgcctattgttcttagttactccttccccttccttttggct 165
Score = 54.0 bits (27), Expect = 7e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaagcc 67
||||||||||||||| |||||||||||| ||||||| |||| ||||| |||||||||
Sbjct: 4 aggaagaggaagaaac-gagtgtctaagagcagtgggcatgggaacatggaggaaagcc 61
>RF01911;MIR2118;AACV01009812.1/23383-23542 39947:Oryza sativa
Japonica Group
Length = 160
Score = 61.9 bits (31), Expect = 3e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 113 tttgtgttttcctaatgcttcccattcctattgttgttagatactccttcctcttcctt 171
||||||||||||| |||| |||||||||||||||| || | | |||||||| |||||||
Sbjct: 96 tttgtgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 154
>RF01911;MIR2118;ABXC01004286.1/22135-21991 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 60.0 bits (30), Expect = 1e-08
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 112 ttttgtgttttcctaatgcttcccattcctattgttgttagatactccttcctcttcctt 171
||||| || ||||| |||| |||||| ||||||||| |||| | |||||||||||| |||
Sbjct: 80 ttttgggtcttcctgatgcctcccatgcctattgttcttaggtgctccttcctcttgctt 139
Query: 172 ttggct 177
||||||
Sbjct: 140 ttggct 145
>RF01911;MIR2118;ABXC01004282.1/25056-24902 4558:Sorghum bicolor
(sorghum)
Length = 155
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 116 gtgttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttt 172
|||||||||| |||| ||||||||||| ||| |||| | |||||||||||||||||
Sbjct: 94 gtgttttcctgatgcctcccattcctacagttcttaggtgctccttcctcttccttt 150
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa
Indica Group
Length = 172
Score = 58.0 bits (29), Expect = 4e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaagcct 68
||||||||||||||| ||| | |||||| |||||||||||| ||||| ||||||||||
Sbjct: 4 aggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaaagcct 63
Query: 69 a 69
|
Sbjct: 64 a 64
>RF01911;MIR2118;ABXC01004283.1/14206-14032 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 56.0 bits (28), Expect = 2e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 121 ttcctaatgcttcccattcctattgttgttagatactccttcctcttccttt 172
||||| |||| |||||||||||| ||| |||| | |||||||||||||||||
Sbjct: 119 ttcctgatgcctcccattcctatggttcttaggtgctccttcctcttccttt 170
>RF01911;MIR2118;ABXC01004282.1/27623-27465 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 52.0 bits (26), Expect = 3e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 120 tttcctaatgcttcccattcctattgttgttagatactccttcctcttcc 169
||||| ||||| |||||||||||| ||| |||| | ||||||||||||||
Sbjct: 102 tttcccaatgcctcccattcctatcgttcttaggttctccttcctcttcc 151
>RF01911;MIR2118;ABXC01004282.1/24832-24688 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 52.0 bits (26), Expect = 3e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaagc 66
|||||| |||||||| || ||||||||| ||||||||||| ||||| |||||||||
Sbjct: 4 aggaagtggaagaaagagaatgtctaagagcagtgggaatgagaacatgaaggaaagc 61
>RF01911;MIR2118;ABXC01004286.1/22374-22204 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 52.0 bits (26), Expect = 3e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 120 tttcctaatgcttcccattcctattgttgttagatactccttcctcttccttttggct 177
||||| ||||| |||||||||||||||| ||| | |||| |||| ||||||||||||
Sbjct: 114 tttcccaatgcctcccattcctattgttcttaagtgctccatccttttccttttggct 171
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 32 ctaagaacagtgggaatggaaacattaaggaaagccta 69
|||||| |||||||||||| ||||| |||||||||||
Sbjct: 27 ctaagagcagtgggaatgggaacatggaggaaagccta 64
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 52.0 bits (26), Expect = 3e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaagc 66
||||||||||||||| | ||||||||| |||||||||||| ||||| ||||||||
Sbjct: 4 aggaagaggaagaaagagtctgtctaagagcagtgggaatgggaacatggaggaaagc 61
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 132 tcccattcctattgttgttagatactccttcctcttcc 169
|||||||||||||||| |||| | ||||||||||||||
Sbjct: 130 tcccattcctattgttcttaggtgctccttcctcttcc 167
>RF01911;MIR2118;AL606706.3/88345-88174 39947:Oryza sativa Japonica
Group
Length = 172
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 127 atgcttcccattcctattgttgttagatactccttcctcttccttt 172
|||| |||||||||||| ||| |||| | |||||||||||||||||
Sbjct: 122 atgcctcccattcctatcgttcttaggtgctccttcctcttccttt 167
>RF01911;MIR2118;AP008217.1/7727087-7726916 39947:Oryza sativa
Japonica Group
Length = 172
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 127 atgcttcccattcctattgttgttagatactccttcctcttccttt 172
|||| |||||||||||| ||| |||| | |||||||||||||||||
Sbjct: 122 atgcctcccattcctatcgttcttaggtgctccttcctcttccttt 167
>RF01911;MIR2118;AL606706.3/95698-95530 39947:Oryza sativa Japonica
Group
Length = 169
Score = 50.1 bits (25), Expect = 1e-05
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 117 tgttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttttggc 176
||||||||| |||| || ||||||||| ||| | | | |||||||||||||||||||||
Sbjct: 109 tgttttcctgatgcctctcattcctatggttctagggtgctccttcctcttccttttggc 168
Query: 177 t 177
|
Sbjct: 169 t 169
>RF01911;MIR2118;AAAA02013919.1/23719-23885 39946:Oryza sativa
Indica Group
Length = 167
Score = 50.1 bits (25), Expect = 1e-05
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 117 tgttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttttggc 176
|||||||| |||| ||||| |||||||| |||| |||||||||||||||| ||||||
Sbjct: 107 tgttttcccgatgcctcccaagcctattgtccttaggtactccttcctcttccctttggc 166
Query: 177 t 177
|
Sbjct: 167 t 167
>RF01911;MIR2118;ABXC01004283.1/13954-13790 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 46.1 bits (23), Expect = 2e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaagcc 67
||||||||||||||| ||| || ||||| ||||||||||| || ||| |||||||||
Sbjct: 4 aggaagaggaagaaacagagggtataagagcagtgggaatgagaatattgaggaaagcc 62
>RF01911;MIR2118;ABXC01004282.1/27391-27234 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 120 tttcctaatgcttcccattcctattgttgttagatactccttcctcttcct 170
||||| ||||| |||||| ||||||||| |||| | ||||||||||||||
Sbjct: 101 tttcccaatgcctcccatgcctattgttcttaggtgttccttcctcttcct 151
>RF01911;MIR2118;ABXC01004283.1/17551-17393 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 46.1 bits (23), Expect = 2e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 127 atgcttcccattcctattgttgttagatactccttcctcttcctttt 173
|||| ||||||||||||| || ||| |||||||||||||||||||
Sbjct: 109 atgcctcccattcctattattcttaagcactccttcctcttcctttt 155
>RF01911;MIR2118;ABXC01004283.1/17320-17155 4558:Sorghum bicolor
(sorghum)
Length = 166
Score = 44.1 bits (22), Expect = 6e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 120 tttcctaatgcttcccattcctattgttgttagatactccttcctcttccttttggct 177
||||||||||| || ||| |||| |||| || | | ||||||||| ||||||||||||
Sbjct: 109 tttcctaatgcctcacatgcctactgttcttcggtcctccttccttttccttttggct 166
>RF01911;MIR2118;AP008210.1/21663107-21662944 39947:Oryza sativa
Japonica Group
Length = 164
Score = 44.1 bits (22), Expect = 6e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 119 ttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttt 172
||||||| |||| |||||||||||| ||| |||| | ||| |||||||| ||||
Sbjct: 106 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 159
