miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;AP008210.1/21667363-21667201 39947:Oryza sativa
Japonica Group
Length = 163
Score = 323 bits (163), Expect = 4e-88
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 2 gtgagccaggaagaggatagagactctaagagcagtaggaatgggaacatgaaggaaagc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgagccaggaagaggatagagactctaagagcagtaggaatgggaacatgaaggaaagc 60
Query: 62 caaaccaagctctaactcctggagttggagatttggtataacgattttcctgatgcctcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaaccaagctctaactcctggagttggagatttggtataacgattttcctgatgcctcc 120
Query: 122 cattcctacagttcttaggtccttgttcctcttactttcggct 164
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cattcctacagttcttaggtccttgttcctcttactttcggct 163
>RF01911;MIR2118;AP008210.1/21663107-21662944 39947:Oryza sativa
Japonica Group
Length = 164
Score = 198 bits (100), Expect = 2e-50
Identities = 146/160 (91%), Gaps = 1/160 (0%)
Strand = Plus / Plus
Query: 2 gtgagccaggaagaggat-agagactctaagagcagtaggaatgggaacatgaaggaaag 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgagccaggaagaggaagagagactctaagagcagtaggaatgggaacatgaaggaaag 60
Query: 61 ccaaaccaagctctaactcctggagttggagatttggtataacgattttcctgatgcctc 120
||||| |||||||||| |||| ||||||||||||| | | |||||||||||||||||
Sbjct: 61 ccaaattaagctctaacctctggtattggagatttggtctgatgattttcctgatgcctc 120
Query: 121 ccattcctacagttcttaggtccttgttcctcttactttc 160
||||||||| ||||||||||| || |||||||||||||||
Sbjct: 121 ccattcctatagttcttaggtgctcgttcctcttactttc 160
>RF01911;MIR2118;ABXC01004282.1/25056-24902 4558:Sorghum bicolor
(sorghum)
Length = 155
Score = 75.8 bits (38), Expect = 2e-13
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 106 ttttcctgatgcctcccattcctacagttcttaggtccttgttcctcttacttt 159
|||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct: 97 ttttcctgatgcctcccattcctacagttcttaggtgctccttcctcttccttt 150
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 27 ctaagagcagtaggaatgggaacatgaaggaaagc 61
|||||||| || |||||||||||||| ||||||||
Sbjct: 27 ctaagagcggtgggaatgggaacatggaggaaagc 61
>RF01911;MIR2118;ABXC01004283.1/14206-14032 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 60.0 bits (30), Expect = 1e-08
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 108 ttcctgatgcctcccattcctacagttcttaggtccttgttcctcttactttcg 161
|||||||||||||||||||||| |||||||||| || |||||||| ||||||
Sbjct: 119 ttcctgatgcctcccattcctatggttcttaggtgctccttcctcttcctttcg 172
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 27 ctaagagcagtaggaatgggaacatgaaggaa 58
||||||||| ||||||||||||||||||||||
Sbjct: 27 ctaagagcaataggaatgggaacatgaaggaa 58
>RF01911;MIR2118;ABXC01004282.1/24617-24453 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 26 tctaagagcagtaggaatgggaacatgaaggaaagccaaac 66
|||||||||||| || ||||||||||| |||||||||||||
Sbjct: 25 tctaagagcagtgggcatgggaacatggaggaaagccaaac 65
>RF01911;MIR2118;ABXC01004286.1/17945-17773 4558:Sorghum bicolor
(sorghum)
Length = 173
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 27 ctaagagcagtaggaatgggaacatgaaggaaagcca 63
||||||||||| |||||||||||||| ||||||||||
Sbjct: 27 ctaagagcagtgggaatgggaacatggaggaaagcca 63
>RF01911;MIR2118;ABXC01004282.1/24832-24688 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 26 tctaagagcagtaggaatgggaacatgaaggaaagc 61
|||||||||||| |||||| ||||||||||||||||
Sbjct: 26 tctaagagcagtgggaatgagaacatgaaggaaagc 61
>RF01911;MIR2118;ABXC01004286.1/20347-20177 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 27 ctaagagcagtaggaatgggaacatgaaggaaagcc 62
|||||| ||||||||||||||||||| |||||||||
Sbjct: 27 ctaagaacagtaggaatgggaacatggaggaaagcc 62
>RF01911;MIR2118;ABXC01004286.1/22374-22204 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 27 ctaagagcagtaggaatgggaacatgaaggaaagcc 62
||||||||||| |||||||||||||| |||||||||
Sbjct: 27 ctaagagcagtgggaatgggaacatggaggaaagcc 62
>RF01911;MIR2118;ABXC01004283.1/20134-19984 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 26 tctaagagcagtaggaatgggaacatgaaggaaagc 61
|||||||||| ||||||| |||||||||||||||||
Sbjct: 26 tctaagagcactaggaataggaacatgaaggaaagc 61
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 26 tctaagagcagtaggaatgggaacatgaaggaaagc 61
|||||||||||| |||||||||||||| ||||||||
Sbjct: 26 tctaagagcagtgggaatgggaacatggaggaaagc 61
Score = 48.1 bits (24), Expect = 4e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 107 tttcctgatgcctcccattcctacagttcttaggtccttgttcctctt 154
||||||| ||||||||||||||| |||||||||| || ||||||||
Sbjct: 118 tttcctggtgcctcccattcctattgttcttaggtgctccttcctctt 165
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa
Indica Group
Length = 172
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 27 ctaagagcagtaggaatgggaacatgaaggaaagcc 62
||||||||||| |||||||||||||| |||||||||
Sbjct: 27 ctaagagcagtgggaatgggaacatggaggaaagcc 62
Score = 46.1 bits (23), Expect = 2e-04
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 106 ttttcctgatgcctcccattcctacagttcttaggtccttgttcctcttactttc 160
|||||| ||||||||||||||||| ||||||| | ||| |||||||| |||||
Sbjct: 114 ttttcccgatgcctcccattcctatcgttcttaagcacttcttcctcttcctttc 168
>RF01911;MIR2118;AL606706.3/88345-88174 39947:Oryza sativa Japonica
Group
Length = 172
Score = 54.0 bits (27), Expect = 6e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 106 ttttcctgatgcctcccattcctacagttcttaggtccttgttcctcttactttc 160
|||||| ||||||||||||||||| |||||||||| || |||||||| |||||
Sbjct: 114 ttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttcctttc 168
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 tctaagagcagtaggaatgggaacat 51
|||||||||||| |||||||||||||
Sbjct: 26 tctaagagcagtgggaatgggaacat 51
>RF01911;MIR2118;AP008210.1/21658799-21658648 39947:Oryza sativa
Japonica Group
Length = 152
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 26 tctaagagcagtaggaatgggaacatgaaggaaag 60
||||||||| ||||||||||||||||| |||||||
Sbjct: 24 tctaagagctgtaggaatgggaacatggaggaaag 58
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 107 tttcctgatgcctcccattcctacagttcttaggtccttgttcctcttacttt 159
|||||| |||||||||||||||| |||||||||| || |||||||| ||||
Sbjct: 95 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttccttt 147
>RF01911;MIR2118;ABXC01004286.1/22135-21991 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 108 ttcctgatgcctcccattcctacagttcttaggtccttgttcctcttactttcggct 164
||||||||||||||||| |||| |||||||||| || |||||||| |||| ||||
Sbjct: 89 ttcctgatgcctcccatgcctattgttcttaggtgctccttcctcttgcttttggct 145
>RF01911;MIR2118;ABXC01004283.1/19912-19741 4558:Sorghum bicolor
(sorghum)
Length = 172
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 30 agagcagtaggaatgggaacatgaaggaaagccaaa 65
|||||||| |||||||||||||| ||||||| ||||
Sbjct: 30 agagcagtgggaatgggaacatggaggaaaggcaaa 65
>RF01911;MIR2118;AC135459.3/87322-87489 39947:Oryza sativa Japonica
Group
Length = 168
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 114 atgcctcccattcctacagttcttaggt 141
||||||||||| ||||||||||||||||
Sbjct: 118 atgcctcccatgcctacagttcttaggt 145
>RF01911;MIR2118;AACV01009812.1/26461-26632 39947:Oryza sativa
Japonica Group
Length = 172
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 20 agagactctaagagcagtaggaatgggaacatgaaggaaa 59
||||| ||||||||||| ||| ||||||||||| ||||||
Sbjct: 19 agagagtctaagagcagcaggcatgggaacatggaggaaa 58
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 114 atgcctcccattcctacagttcttagg 140
||||||||||| |||||||||||||||
Sbjct: 122 atgcctcccatgcctacagttcttagg 148
>RF01911;MIR2118;AP008217.1/7727087-7726916 39947:Oryza sativa
Japonica Group
Length = 172
Score = 48.1 bits (24), Expect = 4e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 113 gatgcctcccattcctacagttcttaggtccttgttcctcttactttc 160
||||||||||||||||| |||||||||| || |||||||| |||||
Sbjct: 121 gatgcctcccattcctatcgttcttaggtgctccttcctcttcctttc 168
>RF01911;MIR2118;AACV01009812.1/23383-23542 39947:Oryza sativa
Japonica Group
Length = 160
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 106 ttttcctgatgcctcccattccta 129
||||||||||||||||||||||||
Sbjct: 102 ttttcctgatgcctcccattccta 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 32 agcagtaggaatgggaacatgaaggaaagc 61
|||||| |||||||||||||| ||||||||
Sbjct: 32 agcagtgggaatgggaacatggaggaaagc 61
>RF01911;MIR2118;AL606706.3/87890-87721 39947:Oryza sativa
Japonica Group
Length = 170
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 27 ctaagagcagtaggaatgggaacatgaaggaaagcc 62
||||||||| |||| ||||||||||| |||||||||
Sbjct: 27 ctaagagcattaggcatgggaacatggaggaaagcc 62
>RF01911;MIR2118;AAAA02013919.1/23719-23885 39946:Oryza sativa
Indica Group
Length = 167
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 27 ctaagagcagtaggaatgggaacatgaaggaaagc 61
||||||||||| || ||||||||||| ||||||||
Sbjct: 26 ctaagagcagtgggcatgggaacatggaggaaagc 60
