miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;AACV01009812.1/12630-12796 39947:Oryza sativa
Japonica Group
Length = 167
Score = 307 bits (155), Expect = 2e-83
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaatgcttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaatgcttaa 64
Query: 61 gcccctctccaatcctcgcatgagattggagatggagttatgagttctcctgatgcctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gcccctctccaatcctcgcatgagattggagatggagttatgagttctcctgatgcctcc 124
Query: 121 caagcctattgttccttggtgctccttcctcttcc 155
|||||||||||||||||||||||||||||||||||
Sbjct: 125 caagcctattgttccttggtgctccttcctcttcc 159
>RF01911;MIR2118;ABXC01004286.1/22135-21991 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 67.9 bits (34), Expect = 4e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctctt 153
||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct: 90 tcctgatgcctcccatgcctattgttcttaggtgctccttcctctt 135
Score = 65.9 bits (33), Expect = 2e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
|||||||||||||||||||| | | |||||||||||||||| ||||| |||||
Sbjct: 5 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatgtaggaa 57
>RF01911;MIR2118;AC135459.3/87322-87489 39947:Oryza sativa
Japonica Group
Length = 168
Score = 65.9 bits (33), Expect = 2e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
|||||||||||||||||||| | | |||||||||||||||| ||||| |||||
Sbjct: 5 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggaggaa 57
>RF01911;MIR2118;ABXC01004283.1/14206-14032 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
||||||||||||||| ||||| |||| | ||||||||||||||||||
Sbjct: 120 tcctgatgcctcccattcctatggttcttaggtgctccttcctcttcc 167
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
||||| ||||||||| |||||||||| | ||||||||||||||||||
Sbjct: 120 tcctggtgcctcccattcctattgttcttaggtgctccttcctcttcc 167
>RF01911;MIR2118;AL606706.3/90746-90578 39947:Oryza sativa Japonica
Group
Length = 169
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct: 114 tcctgatgcctcccatgcctattgttctcagatgctccttcctcttcc 161
Score = 50.1 bits (25), Expect = 9e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
|||||||||||||||||||| | |||| ||||||||||| ||||| |||||
Sbjct: 5 ggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggaggaa 57
>RF01911;MIR2118;AACV01009812.1/23383-23542 39947:Oryza sativa
Japonica Group
Length = 160
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
||||||||||||||| |||||||||| | |||||||||||| |||||
Sbjct: 105 tcctgatgcctcccattcctattgttcttgggtgctccttccccttcc 152
>RF01911;MIR2118;AAAA02013919.1/23719-23885 39946:Oryza sativa
Indica Group
Length = 167
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 112 gatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
||||||||||||||||||||| | | ||| ||||||||||||||
Sbjct: 116 gatgcctcccaagcctattgtccttaggtactccttcctcttcc 159
Score = 50.1 bits (25), Expect = 9e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
||||||||||||| |||| || | |||||||||||||||| ||||| |||||
Sbjct: 5 ggaagaggaagaatagagcacctaagagcagtgggcatgggaacatggaggaa 57
>RF01911;MIR2118;AP008210.1/21658799-21658648 39947:Oryza sativa
Japonica Group
Length = 152
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
|||| |||||||||| |||||||||| | ||||||||||||||||||
Sbjct: 97 tcctaatgcctcccattcctattgttcttaggtgctccttcctcttcc 144
>RF01911;MIR2118;ABXC01004282.1/27391-27234 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 54.0 bits (27), Expect = 6e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 113 atgcctcccaagcctattgttccttggtgctccttcctcttcc 155
|||||||||| ||||||||||| | |||| |||||||||||||
Sbjct: 108 atgcctcccatgcctattgttcttaggtgttccttcctcttcc 150
>RF01911;MIR2118;ABXC01004282.1/24617-24453 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 50.1 bits (25), Expect = 9e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
|||||||||||||| ||| | | | |||||||||||||||| ||||| |||||
Sbjct: 5 ggaagaggaagaaacgagtgtctaagagcagtgggcatgggaacatggaggaa 57
>RF01911;MIR2118;ABXC01004282.1/25056-24902 4558:Sorghum bicolor
(sorghum)
Length = 155
Score = 48.1 bits (24), Expect = 4e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
||||||||||||||| |||| |||| | ||||||||||||||||||
Sbjct: 100 tcctgatgcctcccattcctacagttcttaggtgctccttcctcttcc 147
>RF01911;MIR2118;AL606706.3/88345-88174 39947:Oryza sativa Japonica
Group
Length = 172
Score = 48.1 bits (24), Expect = 4e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 112 gatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
||||||||||| ||||| |||| | ||||||||||||||||||
Sbjct: 121 gatgcctcccattcctatcgttcttaggtgctccttcctcttcc 164
>RF01911;MIR2118;AP008217.1/7727087-7726916 39947:Oryza sativa
Japonica Group
Length = 172
Score = 48.1 bits (24), Expect = 4e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 112 gatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
||||||||||| ||||| |||| | ||||||||||||||||||
Sbjct: 121 gatgcctcccattcctatcgttcttaggtgctccttcctcttcc 164
>RF01911;MIR2118;AP008210.1/21663107-21662944 39947:Oryza sativa
Japonica Group
Length = 164
Score = 44.1 bits (22), Expect = 6e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctctt 153
||||||||||||||| ||||| |||| | ||||||| ||||||||
Sbjct: 109 tcctgatgcctcccattcctatagttcttaggtgctcgttcctctt 154
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa
Indica Group
Length = 172
Score = 44.1 bits (22), Expect = 6e-04
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaa-agagggccaaggagcagtgggcatggggacatgaaggaa 53
|||||||||||||| |||| ||| | |||||||||| ||||| ||||| |||||
Sbjct: 5 ggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaa 58
