miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;AAAA02013919.1/23719-23885 39946:Oryza sativa
Indica Group
Length = 167
Score = 250 bits (126), Expect = 5e-66
Identities = 156/166 (93%)
Strand = Plus / Plus
Query: 5 gtcaggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaaagt 64
||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gtcaggaagaggaagaatagagcacctaagagcagtgggcatgggaacatggaggaaagc 60
Query: 65 tcaaactcttcttcccctctaaattaggggggtcgacttgttttgatgttttcccgatgc 124
|||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 61 tcaaactcttctgtccctctaaaatagcggggtcgacttgttttgatgttttcccgatgc 120
Query: 125 ctcccatgcctattgtccttaggtgctccttcctcttccctttggc 170
|||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 121 ctcccaagcctattgtccttaggtactccttcctcttccctttggc 166
>RF01911;MIR2118;AL606706.3/90746-90578 39947:Oryza sativa Japonica
Group
Length = 169
Score = 115 bits (58), Expect = 2e-25
Identities = 141/166 (84%), Gaps = 2/166 (1%)
Strand = Plus / Plus
Query: 6 tcaggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaaagtt 65
||||||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct: 2 tcaggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggaggaaagcc 61
Query: 66 caaactcttcttcccctcta-aattaggggggtcgactt-gttttgatgttttcccgatg 123
||||||||||||| |||||| || |||||| || || |||| |||||||| ||||
Sbjct: 62 caaactcttcttcgcctctagaactaggggctgagatttggtttccttgttttcctgatg 121
Query: 124 cctcccatgcctattgtccttaggtgctccttcctcttccctttgg 169
||||||||||||||||| || || |||||||||||||||| |||||
Sbjct: 122 cctcccatgcctattgttctcagatgctccttcctcttccttttgg 167
>RF01911;MIR2118;ABXC01004282.1/24617-24453 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 101 bits (51), Expect = 3e-21
Identities = 142/167 (85%), Gaps = 4/167 (2%)
Strand = Plus / Plus
Query: 5 gtcaggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaaagt 64
|||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct: 1 gtcaggaagaggaagaaacgagtgtctaagagcagtgggcatgggaacatggaggaaag- 59
Query: 65 tcaaactcttcttcccctcta-aattaggggggtcgacttgttttgatgttttcccgatg 123
|||||| ||||| |||||| | |||||| | || | |||| | || ||||||||||
Sbjct: 60 ccaaacttttctttacctctacagctaggggtgaagattagtttag-tg-tttcccgatg 117
Query: 124 cctcccatgcctattgtccttaggtgctccttcctcttccctttggc 170
||||||||||||||||| ||||| | |||||||| ||||| ||||||
Sbjct: 118 cctcccatgcctattgttcttagttactccttccccttccttttggc 164
>RF01911;MIR2118;ABXC01004286.1/22135-21991 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 79.8 bits (40), Expect = 1e-14
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 115 ttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttccctttggc 170
|||| ||||||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct: 89 ttcctgatgcctcccatgcctattgttcttaggtgctccttcctcttgcttttggc 144
Score = 65.9 bits (33), Expect = 2e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaa 61
|||||||||||||||||| ||||||| |||||||||||||||||| |||||
Sbjct: 5 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatgtaggaa 57
>RF01911;MIR2118;AL606706.3/88345-88174 39947:Oryza sativa Japonica
Group
Length = 172
Score = 77.8 bits (39), Expect = 5e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 113 ttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 114 ttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttcc 164
>RF01911;MIR2118;ABXC01004282.1/27391-27234 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 75.8 bits (38), Expect = 2e-13
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 114 tttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
|||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 101 tttcccaatgcctcccatgcctattgttcttaggtgttccttcctcttcc 150
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 tgggcatgggaacatggaggaaag 63
||||||||||||||||||||||||
Sbjct: 37 tgggcatgggaacatggaggaaag 60
>RF01911;MIR2118;AC135459.3/87322-87489 39947:Oryza sativa
Japonica Group
Length = 168
Score = 73.8 bits (37), Expect = 7e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaa 61
|||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 5 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggaggaa 57
Score = 54.0 bits (27), Expect = 7e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 113 ttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||| |||||||||||||||| || ||||||| |||||||| |||||
Sbjct: 110 ttttcccaatgcctcccatgcctacagttcttaggtactccttccccttcc 160
>RF01911;MIR2118;AP008210.1/21658799-21658648 39947:Oryza sativa
Japonica Group
Length = 152
Score = 69.9 bits (35), Expect = 1e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 121 atgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 102 atgcctcccattcctattgttcttaggtgctccttcctcttcc 144
>RF01911;MIR2118;ABXC01004282.1/25056-24902 4558:Sorghum bicolor
(sorghum)
Length = 155
Score = 67.9 bits (34), Expect = 4e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 7 caggaagaggaagaaa-agagtacctaagagtagtgggcatgggaacatggaggaaag 63
|||||||||||||||| ||| |||||||||| ||||| |||||||||||||||||||
Sbjct: 3 caggaagaggaagaaagagaatacctaagagcggtgggaatgggaacatggaggaaag 60
Score = 65.9 bits (33), Expect = 2e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 111 tgttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
|||||||| |||||||||||| |||| || ||||||||||||||||||||||
Sbjct: 95 tgttttcctgatgcctcccattcctacagttcttaggtgctccttcctcttcc 147
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 67.9 bits (34), Expect = 4e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 122 tgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
|||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 126 tgcctcccattcctattgttcttaggtgctccttcctcttcc 167
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 30 ctaagagtagtgggcatgggaacatggaggaaag 63
||||||| |||||| |||||||||||||||||||
Sbjct: 27 ctaagagcagtgggaatgggaacatggaggaaag 60
>RF01911;MIR2118;AACV01009812.1/26461-26632 39947:Oryza sativa
Japonica Group
Length = 172
Score = 67.9 bits (34), Expect = 4e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 5 gtcaggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaaa 62
|||||||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 1 gtcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaa 58
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 113 ttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||| |||||||||||||||| || |||||| |||||||| |||||
Sbjct: 114 ttttcccaatgcctcccatgcctacagttcttaggcactccttccacttcc 164
>RF01911;MIR2118;AP008217.1/7727087-7726916 39947:Oryza sativa
Japonica Group
Length = 172
Score = 67.9 bits (34), Expect = 4e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 118 ccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
|||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 119 ccgatgcctcccattcctatcgttcttaggtgctccttcctcttcc 164
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa
Indica Group
Length = 172
Score = 67.9 bits (34), Expect = 4e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 7 caggaagaggaagaaa-agagtacctaagagtagtgggcatgggaacatggaggaaag 63
|||||||||||||||| |||| |||||||| |||||| |||||||||||||||||||
Sbjct: 3 caggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaaag 60
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 113 ttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||||||||||||||| ||||| || |||| | || |||||||||||
Sbjct: 114 ttttcccgatgcctcccattcctatcgttcttaagcacttcttcctcttcc 164
>RF01911;MIR2118;ABXC01004283.1/14206-14032 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 65.9 bits (33), Expect = 2e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 115 ttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
|||| |||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 119 ttcctgatgcctcccattcctatggttcttaggtgctccttcctcttcc 167
>RF01911;MIR2118;AACV01009812.1/23383-23542 39947:Oryza sativa
Japonica Group
Length = 160
Score = 65.9 bits (33), Expect = 2e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 111 tgttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
|||||||| |||||||||||| |||||||| ||| |||||||||||| |||||
Sbjct: 100 tgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcc 152
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 agtgggcatgggaacatggaggaaag 63
|||||| |||||||||||||||||||
Sbjct: 35 agtgggaatgggaacatggaggaaag 60
>RF01911;MIR2118;AL606706.3/87890-87721 39947:Oryza sativa
Japonica Group
Length = 170
Score = 63.9 bits (32), Expect = 7e-10
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaa-gagtacctaagagtagtgggcatgggaacatggaggaaag 63
||||||||||||||| ||| ||||||||| | | ||||||||||||||||||||||
Sbjct: 5 ggaagaggaagaaaaagagcacctaagagcattaggcatgggaacatggaggaaag 60
Score = 58.0 bits (29), Expect = 4e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 111 tgttttcccgatgcctcccatgcctattgtccttaggtgctcc-ttcctcttccctttgg 169
||||||||| || ||||||||||||||||| || ||||| ||| |||||||||| |||||
Sbjct: 109 tgttttcccaatacctcccatgcctattgttctcaggtgttcctttcctcttccttttgg 168
Query: 170 c 170
|
Sbjct: 169 c 169
>RF01911;MIR2118;ABXC01004282.1/27623-27465 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 60.0 bits (30), Expect = 1e-08
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 114 tttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
|||||| ||||||||||| ||||| || ||||||| ||||||||||||||
Sbjct: 102 tttcccaatgcctcccattcctatcgttcttaggttctccttcctcttcc 151
>RF01911;MIR2118;ABXC01004283.1/17551-17393 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 60.0 bits (30), Expect = 1e-08
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 5 gtcaggaagaggaagaaaagagtacctaagagtagtgggcatgggaacat 54
|||||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct: 1 gtcaggaagaggaagaaaggagagcctaagagtagtgggagtgggaacat 50
Score = 44.1 bits (22), Expect = 6e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 118 ccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
|||||||||||||| |||||| | |||| | ||||||||||||||
Sbjct: 106 ccgatgcctcccattcctattattcttaagcactccttcctcttcc 151
>RF01911;MIR2118;AL606706.3/95450-95277 39947:Oryza sativa Japonica
Group
Length = 174
Score = 60.0 bits (30), Expect = 1e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 122 tgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
|||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 125 tgcctcccattcctattgtccttagatactccttcctcttcc 166
>RF01911;MIR2118;ABXC01004282.1/22775-22606 4558:Sorghum bicolor
(sorghum)
Length = 170
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 114 tttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttccctttggc 170
|||||| |||||||||||||||||||| |||| | |||||||| ||||| ||||||
Sbjct: 113 tttcccaatgcctcccatgcctattgttgttagtttctccttccccttccttttggc 169
>RF01911;MIR2118;ABXC01004286.1/22374-22204 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 114 tttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttccctttggc 170
|||||| ||||||||||| |||||||| |||| ||||||| |||| |||| ||||||
Sbjct: 114 tttcccaatgcctcccattcctattgttcttaagtgctccatccttttccttttggc 170
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 29 cctaagagtagtgggcatgggaacatggaggaaag 63
|||||||| |||||| |||||||||||||||||||
Sbjct: 26 cctaagagcagtgggaatgggaacatggaggaaag 60
>RF01911;MIR2118;AP008210.1/21651167-21650991 39947:Oryza sativa
Japonica Group
Length = 177
Score = 58.0 bits (29), Expect = 4e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 111 tgttttcccgatgcctcccatgcctattgtccttaggtgctccttcctc 159
|||||||||||||||| ||||||||| || ||| ||||||||||||||
Sbjct: 117 tgttttcccgatgcctgtcatgcctatcgttcttcggtgctccttcctc 165
>RF01911;MIR2118;AP008210.1/21663107-21662944 39947:Oryza sativa
Japonica Group
Length = 164
Score = 58.0 bits (29), Expect = 4e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 113 ttttcccgatgcctcccatgcctattgtccttaggtgctccttcctctt 161
|||||| |||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 106 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctctt 154
>RF01911;MIR2118;AL606706.3/95698-95530 39947:Oryza sativa Japonica
Group
Length = 169
Score = 58.0 bits (29), Expect = 4e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 110 atgttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttccctttgg 169
||||||||| |||||||| ||| ||||| || || |||||||||||||||||| |||||
Sbjct: 108 atgttttcctgatgcctctcattcctatggttctagggtgctccttcctcttccttttgg 167
Query: 170 c 170
|
Sbjct: 168 c 168
>RF01911;MIR2118;AACV01009812.1/12630-12796 39947:Oryza sativa
Japonica Group
Length = 167
Score = 58.0 bits (29), Expect = 4e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 120 gatgcctcccatgcctattgtccttaggtgctccttcctcttccctttg 168
||||||||||| ||||||||| | | |||||||||||||||||| ||||
Sbjct: 116 gatgcctcccaagcctattgttccttggtgctccttcctcttccttttg 164
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaa 61
|||||||||||||||||| || | ||| |||||||||||| ||||| |||||
Sbjct: 5 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 57
>RF01911;MIR2118;ABXC01004286.1/17945-17773 4558:Sorghum bicolor
(sorghum)
Length = 173
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 29 cctaagagtagtgggcatgggaacatggaggaaag 63
|||||||| |||||| |||||||||||||||||||
Sbjct: 26 cctaagagcagtgggaatgggaacatggaggaaag 60
>RF01911;MIR2118;ABXC01004282.1/24832-24688 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 52.0 bits (26), Expect = 3e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 110 atgttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||||| | |||||| ||| |||| || ||||||||||||||||||||||
Sbjct: 84 atgttttcctgttgcctctcattcctacggttcttaggtgctccttcctcttcc 137
>RF01911;MIR2118;AACV01009812.1/17181-17352 39947:Oryza sativa
Japonica Group
Length = 172
Score = 48.1 bits (24), Expect = 4e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 111 tgttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttccctttggc 170
|||||||| |||| |||||| |||||||| |||| | |||||||||||||| ||||||
Sbjct: 112 tgttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttttggc 171
>RF01911;MIR2118;ABXC01004283.1/19912-19741 4558:Sorghum bicolor
(sorghum)
Length = 172
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 33 agagtagtgggcatgggaacatggaggaaag 63
|||| |||||| |||||||||||||||||||
Sbjct: 30 agagcagtgggaatgggaacatggaggaaag 60
