miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;AAAA02013919.1/20837-21004 39946:Oryza sativa
Indica Group
Length = 168
Score = 236 bits (119), Expect = 8e-62
Identities = 158/170 (92%), Gaps = 2/170 (1%)
Strand = Plus / Plus
Query: 5 gcagggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaag 64
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gcagggaagaggaagaaagagagactctaagagtgatgggaataggaacatggaggaaag 60
Query: 65 cctgaagctaaattttctactccagtatcggagttagaaatttgctctgcgttttcccga 124
||| |||||||||||||| ||||||||| |||| |||| |||||||| ||||||||||
Sbjct: 61 cctaaagctaaattttctgctccagtattggagctagagatttgctc--agttttcccga 118
Query: 125 tgcctcctattcctaccgatcttaggtactccttcctcttcctttaagct 174
||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 119 tgcctcctattcctaccaatcttaggtactccttcctcttccttttagct 168
>RF01911;MIR2118;ABXC01004282.1/30150-29982 4558:Sorghum bicolor
(sorghum)
Length = 169
Score = 79.8 bits (40), Expect = 1e-14
Identities = 87/100 (87%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 76 attttctactccagtatcggagttagaaatttgctctgcgttttcccgatgcctcctatt 135
||||||| ||| || || |||| |||||||||||| || |||||||||||||||||||||
Sbjct: 71 attttctcctctagcattggaggtagaaatttgct-tgtgttttcccgatgcctcctatt 129
Query: 136 cctaccgatcttaggt-actccttcctcttcctttaagct 174
||| ||||||||||| ||||||||| ||| |||| ||||
Sbjct: 130 cctgtcgatcttaggtaactccttcccctttctttcagct 169
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa Indica
Group
Length = 172
Score = 79.8 bits (40), Expect = 1e-14
Identities = 138/168 (82%), Gaps = 2/168 (1%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaagcct- 67
||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||
Sbjct: 5 ggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaaagccta 64
Query: 68 gaagctaaattttctactccagtatcggagttagaaatttgctct-gcgttttcccgatg 126
|| | |||||| | |||||| | |||| | |||||||| | | | |||||||||||
Sbjct: 65 aaaaccaaatttcttcctccagcaatggaggtggaaatttggtttggttttttcccgatg 124
Query: 127 cctcctattcctaccgatcttaggtactccttcctcttcctttaagct 174
||||| ||||||| || ||||| | ||| |||||||||||||| ||||
Sbjct: 125 cctcccattcctatcgttcttaagcacttcttcctcttcctttcagct 172
>RF01911;MIR2118;AL606706.3/88345-88174 39947:Oryza sativa Japonica
Group
Length = 172
Score = 77.8 bits (39), Expect = 5e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 116 ttttcccgatgcctcctattcctaccgatcttaggtactccttcctcttcctttaagct 174
|||||||||||||||| ||||||| || |||||||| ||||||||||||||||| ||||
Sbjct: 114 ttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttcctttcagct 172
Score = 46.1 bits (23), Expect = 2e-04
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaa 63
||||||||||||||||| ||||||||| ||||||| ||||||| |||||||
Sbjct: 5 ggaagaggaagaaagaggtagtctaagagcagtgggaatgggaacatagaggaaa 59
>RF01911;MIR2118;ABXC01004282.1/25056-24902 4558:Sorghum bicolor
(sorghum)
Length = 155
Score = 69.9 bits (35), Expect = 1e-11
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 115 gttttcccgatgcctcctattcctaccgatcttaggtactccttcctcttccttt 169
||||||| ||||||||| |||||||| | |||||||| |||||||||||||||||
Sbjct: 96 gttttcctgatgcctcccattcctacagttcttaggtgctccttcctcttccttt 150
Score = 67.9 bits (34), Expect = 4e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaagcctg 68
|||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||
Sbjct: 5 ggaagaggaagaaagagaatacctaagagcggtgggaatgggaacatggaggaaagcatg 64
Query: 69 aa 70
||
Sbjct: 65 aa 66
>RF01911;MIR2118;AP008217.1/7727087-7726916 39947:Oryza sativa
Japonica Group
Length = 172
Score = 67.9 bits (34), Expect = 4e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 121 ccgatgcctcctattcctaccgatcttaggtactccttcctcttcctttaagct 174
||||||||||| ||||||| || |||||||| ||||||||||||||||| ||||
Sbjct: 119 ccgatgcctcccattcctatcgttcttaggtgctccttcctcttcctttcagct 172
>RF01911;MIR2118;ABXC01004282.1/27623-27465 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 65.9 bits (33), Expect = 2e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaagc 65
|||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||
Sbjct: 5 ggaagaggaagaaagagatagtctaagagcaatgggaatgggagcatggaggaaagc 61
Score = 60.0 bits (30), Expect = 1e-08
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 117 tttcccgatgcctcctattcctaccgatcttaggtactccttcctcttcc 166
|||||| |||||||| ||||||| || |||||||| ||||||||||||||
Sbjct: 102 tttcccaatgcctcccattcctatcgttcttaggttctccttcctcttcc 151
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaagc 65
||||||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct: 5 ggaagaggaagaaagagtctgtctaagagcagtgggaatgggaacatggaggaaagc 61
Score = 44.1 bits (22), Expect = 6e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 125 tgcctcctattcctaccgatcttaggtactccttcctcttcc 166
||||||| ||||||| | |||||||| ||||||||||||||
Sbjct: 126 tgcctcccattcctattgttcttaggtgctccttcctcttcc 167
>RF01911;MIR2118;ABXC01004283.1/14206-14032 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 56.0 bits (28), Expect = 2e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 118 ttcccgatgcctcctattcctaccgatcttaggtactccttcctcttccttt 169
|||| ||||||||| ||||||| | |||||||| |||||||||||||||||
Sbjct: 119 ttcctgatgcctcccattcctatggttcttaggtgctccttcctcttccttt 170
Score = 52.0 bits (26), Expect = 3e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaa 62
||||||||||||||||||| |||||||| || ||||| |||||||| |||||
Sbjct: 5 ggaagaggaagaaagagaggtcctaagagcaataggaatgggaacatgaaggaa 58
>RF01911;MIR2118;AC135459.3/87322-87489 39947:Oryza sativa Japonica
Group
Length = 168
Score = 56.0 bits (28), Expect = 2e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 116 ttttcccgatgcctcctattcctaccgatcttaggtactccttcctcttcct 167
||||||| |||||||| || ||||| | ||||||||||||||||| ||||||
Sbjct: 110 ttttcccaatgcctcccatgcctacagttcttaggtactccttccccttcct 161
Score = 46.1 bits (23), Expect = 2e-04
Identities = 48/55 (87%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 8 gggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaa 62
||||||||||||||| |||| ||||||||| |||| || ||||||||||||||
Sbjct: 4 gggaagaggaagaaa-agagggtctaagagcagtgggcatgggaacatggaggaa 57
>RF01911;MIR2118;AL606706.3/87890-87721 39947:Oryza sativa
Japonica Group
Length = 170
Score = 56.0 bits (28), Expect = 2e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 8 gggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaagcct 67
||||||||||||||| ||||| |||||||| | || || |||||||||||||||||||
Sbjct: 4 gggaagaggaagaaaaagagcacctaagagcattaggcatgggaacatggaggaaagcct 63
>RF01911;MIR2118;ABXC01004286.1/17945-17773 4558:Sorghum bicolor
(sorghum)
Length = 173
Score = 54.0 bits (27), Expect = 7e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 8 gggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaagcc 66
|||||||| ||||||||| | |||||||| ||||||| ||||||||||||||||||
Sbjct: 4 gggaagagcaagaaagagcgggcctaagagcagtgggaatgggaacatggaggaaagcc 62
>RF01911;MIR2118;ABXC01004282.1/24832-24688 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 54.0 bits (27), Expect = 7e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 115 gttttcccgatgcctcctattcctaccgatcttaggtactccttcctcttccttt 169
||||||| | |||||| |||||||| | |||||||| |||||||||||||||||
Sbjct: 86 gttttcctgttgcctctcattcctacggttcttaggtgctccttcctcttccttt 140
Score = 44.1 bits (22), Expect = 6e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaagcctg 68
||||| |||||||||||| ||||||||| ||||||| ||||||| |||||||| ||
Sbjct: 5 ggaagtggaagaaagagaatgtctaagagcagtgggaatgagaacatgaaggaaagcatg 64
Query: 69 aa 70
||
Sbjct: 65 aa 66
>RF01911;MIR2118;ABXC01004283.1/20134-19984 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 115 gttttcccgatgcctcctattcctaccgatcttaggtactccttcc 160
||||||| ||||||||||||||||| | |||||||| ||||||||
Sbjct: 92 gttttcctgatgcctcctattcctaaggctcttaggttctccttcc 137
>RF01911;MIR2118;AL606706.3/90746-90578 39947:Oryza sativa
Japonica Group
Length = 169
Score = 52.0 bits (26), Expect = 3e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaagcc 66
|||||||||||||| |||| ||| |||||| |||| || ||||||||||||||||||
Sbjct: 5 ggaagaggaagaaa-agagggtctgagagcggtgggcatgggaacatggaggaaagcc 61
>RF01911;MIR2118;AP008210.1/21658799-21658648 39947:Oryza sativa
Japonica Group
Length = 152
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 124 atgcctcctattcctaccgatcttaggtactccttcctcttccttt 169
|||||||| ||||||| | |||||||| |||||||||||||||||
Sbjct: 102 atgcctcccattcctattgttcttaggtgctccttcctcttccttt 147
Score = 44.1 bits (22), Expect = 6e-04
Identities = 49/57 (85%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 8 gggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaag 64
||||||||||||| |||| | ||||||||| | ||||| ||||||||||||||||
Sbjct: 4 gggaagaggaagacagaggg--tctaagagctgtaggaatgggaacatggaggaaag 58
>RF01911;MIR2118;ABXC01004282.1/24617-24453 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 117 tttcccgatgcctcctattcctaccgatcttaggtactccttcctcttccttt 169
||||||||||||||| || |||| | |||||| |||||||||| ||||||||
Sbjct: 108 tttcccgatgcctcccatgcctattgttcttagttactccttccccttccttt 160
Score = 44.1 bits (22), Expect = 6e-04
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaagcc 66
|||||||||||||| ||| ||||||||| |||| || ||||||||||||||||||
Sbjct: 5 ggaagaggaagaaac-gagtgtctaagagcagtgggcatgggaacatggaggaaagcc 61
>RF01911;MIR2118;ABXC01004282.1/27391-27234 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 8 gggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaag 64
||||||| ||||||| |||| |||||| ||| |||| || ||||||||||||||||
Sbjct: 4 gggaagatgaagaaaaagagtatctaagggcgttgggcatgggaacatggaggaaag 60
>RF01911;MIR2118;ABXC01004286.1/22374-22204 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 31 ctaagagcgatgggaataggaacatggaggaaagcct 67
|||||||| ||||||| |||||||||||||||||||
Sbjct: 27 ctaagagcagtgggaatgggaacatggaggaaagcct 63
>RF01911;MIR2118;AACV01009812.1/23383-23542 39947:Oryza sativa
Japonica Group
Length = 160
Score = 48.1 bits (24), Expect = 4e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 6 cagggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaagc 65
|||||||||||||||| ||||| | || ||| ||||||| |||||||||||||||||
Sbjct: 2 cagggaagaggaagaacgagagggttcaatagcagtgggaatgggaacatggaggaaagc 61
>RF01911;MIR2118;AAAA02013919.1/23719-23885 39946:Oryza sativa
Indica Group
Length = 167
Score = 48.1 bits (24), Expect = 4e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 115 gttttcccgatgcctcctattcctaccgatcttaggtactccttcctcttcc 166
||||||||||||||||| | |||| | ||||||||||||||||||||||
Sbjct: 108 gttttcccgatgcctcccaagcctattgtccttaggtactccttcctcttcc 159
>RF01911;MIR2118;AL606706.3/95450-95277 39947:Oryza sativa
Japonica Group
Length = 174
Score = 46.1 bits (23), Expect = 2e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaagcct 67
|||||||||||||| ||| |||||| || || ||||| ||||||| |||||||||||
Sbjct: 5 ggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaagcct 63
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 145 cttaggtactccttcctcttcctttaagct 174
||||| ||||||||||||||||||| ||||
Sbjct: 145 cttagatactccttcctcttcctttcagct 174
>RF01911;MIR2118;AAAA02013919.1/25848-26037 39946:Oryza sativa
Indica Group
Length = 190
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 8 gggaagaggaagaaagagagcctctaagag 37
|||||||||||||||||||| ||| |||||
Sbjct: 4 gggaagaggaagaaagagaggctccaagag 33
