miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 278 bits (140), Expect = 4e-74
Identities = 224/249 (89%), Gaps = 6/249 (2%)
Strand = Plus / Plus
Query: 11 ggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggttgttccgct 70
||||| |||||| |||||||||||||||||||||||||| || | | |||| ||||||||
Sbjct: 1 ggattcgaagcgaagctcctatcattccaatgaagggcccttttcatgggtggttccgct 60
Query: 71 gctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtattttcgagag 130
|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |
Sbjct: 61 gctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtactctagag-g 119
Query: 131 ggaggagaggagctagactctcatggtggtc-gtctttgagataggcttgtggtttgcat 189
| |||| ||| | || |||| ||| ||||||||||||||||||||||||||||
Sbjct: 120 gcccgagaagagat----tcatgtggtcgtcagtctttgagataggcttgtggtttgcat 175
Query: 190 gaccgaggagctgcaccgtccccttgctggccgctctttggattgaagggagctctgcat 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gaccgaggagctgcaccgtccccttgctggccgctctttggattgaagggagctctgcat 235
Query: 250 cctgatcca 258
|||||||||
Sbjct: 236 cctgatcca 244
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 188 bits (95), Expect = 3e-47
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 160 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctgg 219
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 135 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 194
Query: 220 ccgctctttggattgaagggagctctgcatcctgatcca 258
|||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ccgctctttggattgaagggagctctgcatcctgatcca 233
Score = 133 bits (67), Expect = 1e-30
Identities = 89/95 (93%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 14 tttgaagcggagctcctatcattccaatgaagggccgttctgaagggttg-ttccgctgc 72
|||||||||||||||||||||||||||||||||| ||| | |||||| | |||||||||
Sbjct: 4 tttgaagcggagctcctatcattccaatgaagggtcgtaccgaagggccggttccgctgc 63
Query: 73 tcgttcatggttcccactatcctatctcatcatgt 107
|||||||||||||||||||||||||||||||||||
Sbjct: 64 tcgttcatggttcccactatcctatctcatcatgt 98
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 99.6 bits (50), Expect = 2e-20
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 166 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 224
||||||| |||||||||||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 129 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 188
Query: 225 ctttggattgaagggagctctgcatc 250
|||||| ||||||||||||||||||
Sbjct: 189 gtttggagtgaagggagctctgcatc 214
Score = 58.0 bits (29), Expect = 7e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcatca 104
||||||||||||||||||||||| ||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactgtcccatctcatca 94
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 99.6 bits (50), Expect = 2e-20
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 168 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 227
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 156
Query: 228 tggattgaagggagctctgcatcctgatcc 257
||||||||||||||||||||||| ||||||
Sbjct: 157 tggattgaagggagctctgcatcttgatcc 186
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcat 102
|||||| |||||||||||||||||| |||||||||
Sbjct: 55 gctgcttgttcatggttcccactattctatctcat 89
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 93.7 bits (47), Expect = 1e-18
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 166 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccc-ttgctggccgct 224
||||||| ||| ||||||||||||||||||||||||||| ||||||| ||| | |||||
Sbjct: 135 ttgagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgct 194
Query: 225 ctttggattgaagggagctctgc 247
| |||||||||||||||||||||
Sbjct: 195 cgttggattgaagggagctctgc 217
Score = 65.9 bits (33), Expect = 3e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcatca 104
||||||||||||||||||||||||||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcccatctcatca 94
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 223 ctctttggattgaagggagctctgcatc 250
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 224 tctttggattgaagggagctctgcatc 250
|||||||||||||||||||||| ||||
Sbjct: 174 tctttggattgaagggagctcttcatc 200
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 224 tctttggattgaagggagctctgcatc 250
|||||||||||||||||||||| ||||
Sbjct: 170 tctttggattgaagggagctctacatc 196
