miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABXC01001399.1/20364-20487 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 246 bits (124), Expect = 6e-65
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 2 ctgacagaagagagtgagcacgcatcggccagactgcatctatatacggctgctcctggc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacgcatcggccagactgcatctatatacggctgctcctggc 60
Query: 62 gagatatggatggatggatgtctaggcgcagctgctgttgcgtgctcacttctctttctg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagatatggatggatggatgtctaggcgcagctgctgttgcgtgctcacttctctttctg 120
Query: 122 tcag 125
||||
Sbjct: 121 tcag 124
>RF00073;mir-156;EU957877.1/286-402 4577:Zea mays
Length = 117
Score = 170 bits (86), Expect = 3e-42
Identities = 114/124 (91%), Gaps = 7/124 (5%)
Strand = Plus / Plus
Query: 2 ctgacagaagagagtgagcacgcatcggccagactgcatctatatacggctgctcctggc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacgcatcggccagactgcatctatatacggctgctcctggc 60
Query: 62 gagatatggatggatggatgtctaggcgcagctgctgttgcgtgctcacttctctttctg 121
|| |||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 61 ga-------atggatagatgccaaggcgcagctgctgttgcgtgctcacttctctttctg 113
Query: 122 tcag 125
||||
Sbjct: 114 tcag 117
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 89 gcagctgctgttgcgtgctcacttctctttctgtcag 125
|||||||||| ||||||||||||||||| ||||||||
Sbjct: 83 gcagctgctgctgcgtgctcacttctctctctgtcag 119
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 2 ctgacagaagagagtgagcacgcatcggccagactgcatc 41
||||||||||||||||||||| || ||| |||||||||||
Sbjct: 1 ctgacagaagagagtgagcacacagcgggcagactgcatc 40
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
Japonica Group
Length = 112
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 2 ctgacagaagagagtgagcacgcatcggccagactgcatct 42
||||||||||||||||||||| || ||| ||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacacagcgggcagactgcatct 41
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 98 gttgcgtgctcacttctctttctgtcag 125
||||||||||||||||||| ||||||||
Sbjct: 85 gttgcgtgctcacttctctctctgtcag 112
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 2 ctgacagaagagagtgagcacgcatcggccagactgcatct 42
||||||||||||||||||||| || ||| ||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacacagcgggcagactgcatct 41
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 98 gttgcgtgctcacttctctttctgtcag 125
||||||||||||||||||| ||||||||
Sbjct: 87 gttgcgtgctcacttctctctctgtcag 114
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 94 tgctgttgcgtgctcacttctctttctgtca 124
|||| ||||||||||||||||||||||||||
Sbjct: 51 tgcttttgcgtgctcacttctctttctgtca 81
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 100 tgcgtgctcacttctctttctgtcag 125
||||||||||||||||||||||||||
Sbjct: 57 tgcgtgctcacttctctttctgtcag 82
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya (papaya)
Length = 82
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 99 ttgcgtgctcacttctctttctgtca 124
||||||||||||||||||||||||||
Sbjct: 56 ttgcgtgctcacttctctttctgtca 81
>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 100 tgcgtgctcacttctctttctgtca 124
|||||||||||||||||||||||||
Sbjct: 59 tgcgtgctcacttctctttctgtca 83
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 101 gcgtgctcacttctctttctgtcag 125
|||||||||||||||||||||||||
Sbjct: 62 gcgtgctcacttctctttctgtcag 86
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 94 tgctgttgcgtgctcacttctctttctgtcag 125
|||| ||||||||||| |||||||||||||||
Sbjct: 51 tgcttttgcgtgctcatttctctttctgtcag 82
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana (thale
cress)
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 99 ttgcgtgctcacttctctttctgtcag 125
||||||||||||| |||||||||||||
Sbjct: 58 ttgcgtgctcactgctctttctgtcag 84
>RF00073;mir-156;AACV01011046.1/23142-23062 39947:Oryza sativa
Japonica Group
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 gtgctcacttctctttctgtcag 125
|||||||||||||||||||||||
Sbjct: 59 gtgctcacttctctttctgtcag 81
>RF00073;mir-156;AY551212.1/74-153 4530:Oryza sativa (rice)
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 gtgctcacttctctttctgtcag 125
|||||||||||||||||||||||
Sbjct: 58 gtgctcacttctctttctgtcag 80
>RF00073;mir-156;EU548312.1/193-274 3702:Arabidopsis thaliana (thale
cress)
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 tgcgtgctcacttctctttctgtcag 125
||||||||||| ||||||||||||||
Sbjct: 57 tgcgtgctcacctctctttctgtcag 82
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 tgcgtgctcacttctctttctgtcag 125
||||||||||| ||||||||||||||
Sbjct: 58 tgcgtgctcacctctctttctgtcag 83
>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
Length = 83
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 tgcgtgctcacttctctttctgtcag 125
||||||||||| ||||||||||||||
Sbjct: 58 tgcgtgctcacctctctttctgtcag 83
