miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
          (sorghum)
          Length = 91

 Score =  180 bits (91), Expect = 2e-45
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtgacagaagagagtgagcacacggccgggcgtgacggcaccggtcaaggatgtgccgtc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacacggccgggcgtgacggcaccggtcaaggatgtgccgtc 60

                                         
Query: 61 gcggccgcgtgctcactgctctttctgtcat 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 gcggccgcgtgctcactgctctttctgtcat 91




>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
          Japonica Group
          Length = 88

 Score =  121 bits (61), Expect = 2e-27
 Identities = 84/91 (92%), Gaps = 3/91 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtgacagaagagagtgagcacacggccgggcgtgacggcaccggtcaaggatgtgccgtc 60
          ||||||||||||||||||||||||||||||||  ||||||||||    ||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacacggccgggcggaacggcaccggc---ggatgtgccgtc 57

                                         
Query: 61 gcggccgcgtgctcactgctctttctgtcat 91
          |||||||||||||||||||||| ||||||||
Sbjct: 58 gcggccgcgtgctcactgctctgtctgtcat 88




>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
          (sorghum)
          Length = 87

 Score =  105 bits (53), Expect = 1e-22
 Identities = 83/91 (91%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtgacagaagagagtgagcacacggccgggcgtgacggcaccggtcaaggatgtgccgtc 60
          ||||||||||||||||||||||||||||| ||  ||||||||||    ||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacacggccgg-cggaacggcaccggc---ggatgtgccgtc 56

                                         
Query: 61 gcggccgcgtgctcactgctctttctgtcat 91
          |||||||||||||||||||||| ||||||||
Sbjct: 57 gcggccgcgtgctcactgctctatctgtcat 87




>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
          Group
          Length = 90

 Score = 93.7 bits (47), Expect = 4e-19
 Identities = 84/93 (90%), Gaps = 5/93 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtgacagaagagagtgagcacacggccgggcgtgacggcaccggtcaaggat-gt-gccg 58
          ||||||||||||||||||||||||||||||||  ||||||||||    |||| || ||||
Sbjct: 1  gtgacagaagagagtgagcacacggccgggcggaacggcaccgg---cggatagtagccg 57

                                           
Query: 59 tcgcggccgcgtgctcactgctctttctgtcat 91
          |||||||||||||||||||||||| ||||||||
Sbjct: 58 tcgcggccgcgtgctcactgctctgtctgtcat 90




>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
          (sorghum)
          Length = 86

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 2  tgacagaagagagtgagcacacggc 26
          |||||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacacggc 26



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 64 gccgcgtgctcactgctctttctgtca 90
          |||||||||||||| ||||||||||||
Sbjct: 59 gccgcgtgctcacttctctttctgtca 85




>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
          Group
          Length = 86

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 2  tgacagaagagagtgagcacacggc 26
          |||||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacacggc 26



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 64 gccgcgtgctcactgctctttctgtca 90
          |||||||||||||| ||||||||||||
Sbjct: 59 gccgcgtgctcactcctctttctgtca 85




>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
          Length = 88

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 2  tgacagaagagagtgagcacacggc 26
          |||||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacacggc 26




>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
          (thale cress)
          Length = 84

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 67 gcgtgctcactgctctttctgtca 90
          ||||||||||||||||||||||||
Sbjct: 60 gcgtgctcactgctctttctgtca 83



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
          Japonica Group
          Length = 91

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  gtgacagaagagagtgagcacacg 24
          ||||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacacg 24




>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
          (papaya)
          Length = 82

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 2  tgacagaagagagtgagcacacg 24
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacacg 24




>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
          (thale cress)
          Length = 98

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gtgacagaagagagtgagcacac 23
          |||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacac 23




>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
          (thale cress)
          Length = 92

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gtgacagaagagagtgagcacac 23
          |||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacac 23




>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
          trichocarpa
          Length = 85

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gtgacagaagagagtgagcacac 23
          |||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacac 23




>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
          (castor bean)
          Length = 84

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gtgacagaagagagtgagcacac 23
          |||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacac 23




>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
          (castor bean)
          Length = 83

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 2  tgacagaagagagtgagcacacg 24
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacacg 24




>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
          (castor bean)
          Length = 87

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gtgacagaagagagtgagcacac 23
          |||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacac 23




>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
          (barrel medic)
          Length = 86

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gtgacagaagagagtgagcacac 23
          |||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacac 23




>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
          Length = 82

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gtgacagaagagagtgagcacac 23
          |||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacac 23




>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
          Length = 81

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 2  tgacagaagagagtgagcacacg 24
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacacg 24




>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
          Length = 89

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gtgacagaagagagtgagcacac 23
          |||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacac 23




>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
          Length = 84

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gtgacagaagagagtgagcacac 23
          |||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcacac 23




>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
          (papaya)
          Length = 82

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
          (thale cress)
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
          trichocarpa
          Length = 85

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
          trichocarpa
          Length = 85

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
          (castor bean)
          Length = 82

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gtgacagaagagagtgagcaca 22
          ||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcaca 22




>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
          Length = 82

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
          (sorghum)
          Length = 86

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
          (sorghum)
          Length = 119

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
          grass)
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
          Japonica Group
          Length = 112

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
          Indica Group
          Length = 114

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
          Length = 93

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
          Group
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  tgacagaagagagtgagcacac 23
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacac 23




>RF00073;mir-156;ABEU01000369.1/338030-338109
          145481:Physcomitrella patens subsp. patens
          Length = 80

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gtgacagaagagagtgagcaca 22
          ||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcaca 22




>RF00073;mir-156;ABEU01001319.1/101465-101387
          145481:Physcomitrella patens subsp. patens
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gtgacagaagagagtgagcaca 22
          ||||||||||||||||||||||
Sbjct: 1  gtgacagaagagagtgagcaca 22