miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
           (sorghum)
          Length = 106

 Score =  198 bits (100), Expect = 9e-51
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctggctccctgtatgccactcgcttagctgccaacaactcatactacgttgttaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   tgcctggctccctgtatgccactcgcttagctgccaacaactcatactacgttgttaacg 63

                                                   
Query: 61  acgttggctctactgcggatggcgtgcgaggagccaagca 100
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  acgttggctctactgcggatggcgtgcgaggagccaagca 103




>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
           Indica Group
          Length = 136

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 64  ttggctctactgcggatggcgtgcgaggagccaagca 100
           |||||||||||||||||||||||||||||||||||||
Sbjct: 97  ttggctctactgcggatggcgtgcgaggagccaagca 133



 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  tgcctggctccctgtatgccactcgcttagctgccaa 37
          |||||||||||||||||||||||||| ||||||||||
Sbjct: 4  tgcctggctccctgtatgccactcgcgtagctgccaa 40




>RF00247;mir-160;EU970393.1/2-98 4577:Zea mays
          Length = 97

 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 62 cgttggctctactgcggatggcgtgcgaggagccaa 97
          ||||||||| ||||||||||||||||||||||||||
Sbjct: 62 cgttggctccactgcggatggcgtgcgaggagccaa 97




>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
          Length = 85

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 1  tgcctggctccctgtatgccactcgc 26
          ||||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccactcgc 29




>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
          (sorghum)
          Length = 101

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 1  tgcctggctccctgtatgccactcgc 26
          ||||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccactcgc 29




>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
          Length = 100

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 1  tgcctggctccctgtatgccactcgcttagctgccaac 38
          |||||||||||||||||||| ||||| | |||||||||
Sbjct: 4  tgcctggctccctgtatgccgctcgcatggctgccaac 41




>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
          Length = 90

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  tgcctggctccctgtatgccactcgcttag 30
          ||||||||||||||||||||||| ||||||
Sbjct: 4  tgcctggctccctgtatgccactggcttag 33



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 69  tctactgcggatggcgtgcgaggagccaagca 100
           ||||| |||| |||||||||||||||||||||
Sbjct: 56  tctacggcgggtggcgtgcgaggagccaagca 87




>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
          (sorghum)
          Length = 89

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  tgcctggctccctgtatgccactc 24
          ||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccactc 27




>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
          Length = 96

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  tgcctggctccctgtatgccactc 24
          ||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccactc 27




>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
          Indica Group
          Length = 93

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  tgcctggctccctgtatgccactc 24
          ||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccactc 27




>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  tgcctggctccctgtatgccactc 24
          ||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccactc 27




>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
          Length = 90

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 74  tgcggatggcgtgcgaggagccaagca 100
           ||||| |||||||||||||||||||||
Sbjct: 61  tgcgggtggcgtgcgaggagccaagca 87



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
          patens subsp. patens
          Length = 87

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgcctggctccctgtatgccact 23
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccact 26




>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
          (papaya)
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
          pekinensis
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
          trichocarpa
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
          Length = 89

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 3  tgcctggctccctgtatgccac 24




>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
          (castor bean)
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
          Length = 86

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 75 gcggatggcgtgcgaggagcca 96
          ||||||||||||||||||||||
Sbjct: 58 gcggatggcgtgcgaggagcca 79




>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
          burmannicoides
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
          Length = 92

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
          (sorghum)
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;ABEU01007064.1/27442-27356 145481:Physcomitrella
          patens subsp. patens
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgcctggctccctgtatgccac 22
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25