miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 252 bits (127), Expect = 1e-66
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 1 gggcgcagtggtttatcgatctcttccttgccttgtgctagtccagaagtagtggtggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gggcgcagtggtttatcgatctcttccttgccttgtgctagtccagaagtagtggtggtt 64
Query: 61 caagcgtttattgctgcaataacttgcaaaacaacgcgggaatcgatcgataaacctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 caagcgtttattgctgcaataacttgcaaaacaacgcgggaatcgatcgataaacctctg 124
Query: 121 catccag 127
|||||||
Sbjct: 125 catccag 131
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 121 bits (61), Expect = 2e-27
Identities = 115/129 (89%), Gaps = 3/129 (2%)
Strand = Plus / Plus
Query: 1 gggcgcagtggtttatcgatctcttccttgccttgtgctagtccag-aagtagtggtggt 59
||||||||||||||||||||||||||||||||||||||| |||| | | |||||||||
Sbjct: 5 gggcgcagtggtttatcgatctcttccttgccttgtgctggtccggccgggagtggtggt 64
Query: 60 tcaagcg-tttattgctgcaataacttgcaaaacaacgcgggaatcgatcgataaacctc 118
||||||| ||||||| |||| | || || ||||||||||||||||| ||||||||||||
Sbjct: 65 tcaagcgttttattgttgcagcagctcgc-aaacaacgcgggaatcggtcgataaacctc 123
Query: 119 tgcatccag 127
|||||||||
Sbjct: 124 tgcatccag 132
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 73.8 bits (37), Expect = 5e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 91 acaacgcgggaatcgatcgataaacctctgcatccag 127
|||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaacgcgggaatcgatcgataaacctctgcatccag 157
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 gggcgcagtggtttatcgatctcttccttgccttgtg 37
||||||||||||||||||||| ||||| |||||||||
Sbjct: 5 gggcgcagtggtttatcgatcccttccctgccttgtg 41
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 73.8 bits (37), Expect = 5e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 91 acaacgcgggaatcgatcgataaacctctgcatccag 127
|||||||||||||||||||||||||||||||||||||
Sbjct: 122 acaacgcgggaatcgatcgataaacctctgcatccag 158
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 gggcgcagtggtttatcgatctcttccttgccttgtg 37
||||||||||||||||||||| ||||| |||||||||
Sbjct: 5 gggcgcagtggtttatcgatcccttccctgccttgtg 41
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 69.9 bits (35), Expect = 8e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 gggcgcagtggtttatcgatctcttccttgccttgtgct 39
||||||||||||||||||||||||||| |||||||||||
Sbjct: 5 gggcgcagtggtttatcgatctcttccctgccttgtgct 43
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 91 acaacgcgggaatcgatcgataaacctctgcatccag 127
||||||| ||||||||||||||| |||||||||||||
Sbjct: 80 acaacgcaggaatcgatcgataagcctctgcatccag 116
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 100 gaatcgatcgataaacctctgcatccag 127
||||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 100 gaatcgatcgataaacctctgcatccag 127
||||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 100 gaatcgatcgataaacctctgcatccag 127
||||||||||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatccag 95
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 100 gaatcgatcgataaacctctgcatccag 127
|||| |||||||||||||||||||||||
Sbjct: 60 gaatagatcgataaacctctgcatccag 87
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 cgatcgataaacctctgcatccag 127
||||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 cgatcgataaacctctgcatccag 127
||||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 100 gaatcgatcgataaacctctgcatccag 127
|||||| |||||||||||||||||||||
Sbjct: 62 gaatcggtcgataaacctctgcatccag 89
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 100 gaatcgatcgataaacctctgcatccag 127
|||||| |||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccag 87
