miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;ABXC01006134.1/23615-23833 4558:Sorghum bicolor
(sorghum)
Length = 219
Score = 406 bits (205), Expect = e-113
Identities = 205/205 (100%)
Strand = Plus / Plus
Query: 1 gttggagaagcagggcacgtgcagagacacgccggccggagcacggccgccgccgataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgcagagacacgccggccggagcacggccgccgccgataga 68
Query: 61 tcgacctcgcactcgcactcgcacaccagctgcgtctgcgtgtggatgaggtcgagatcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 tcgacctcgcactcgcactcgcacaccagctgcgtctgcgtgtggatgaggtcgagatcg 128
Query: 121 tcgtcggtcgaagctagcgaggaacctcttgcttgttgcttcacccgctagctcctgcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tcgtcggtcgaagctagcgaggaacctcttgcttgttgcttcacccgctagctcctgcac 188
Query: 181 tgcacgtgctccccttctccaccat 205
|||||||||||||||||||||||||
Sbjct: 189 tgcacgtgctccccttctccaccat 213
>RF00647;MIR164;CAAP02000002.1/260390-260272 29760:Vitis vinifera
Length = 119
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gttggagaagcagggcacgtgcaga 25
|||||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgcaga 33
>RF00647;MIR164;AAAA02016828.1/18978-18860 39946:Oryza sativa Indica
Group
Length = 119
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 181 tgcacgtgctccccttctccaccat 205
|||||||||||||||||||||||||
Sbjct: 89 tgcacgtgctccccttctccaccat 113
>RF00647;MIR164;ABIM01024497.1/24000-24085 3649:Carica papaya
(papaya)
Length = 86
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 174 cctgcactgcacgtgctccccttctcca 201
|||||| |||||||||||||||||||||
Sbjct: 49 cctgcattgcacgtgctccccttctcca 76
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttggagaagcagggcacgtgca 23
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya
(papaya)
Length = 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttggagaagcagggcacgtgca 23
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttggagaagcagggcacgtgca 23
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
Length = 95
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttggagaagcagggcacgtgca 23
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;AC167403.2/113120-113214 3880:Medicago truncatula
(barrel medic)
Length = 95
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttggagaagcagggcacgtgca 23
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;AC235335.1/132786-132675 3847:Glycine max
(soybean)
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttggagaagcagggcacgtgca 23
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 175 ctgcactgcacgtgctccccttctcca 201
|||| ||||||||||||||||||||||
Sbjct: 48 ctgctctgcacgtgctccccttctcca 74
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tggagaagcagggcacgtgcag 24
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcag 32
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttggagaagcagggcacgtgca 23
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;AC226040.1/15354-15265 4641:Musa acuminata
Length = 90
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gttggagaagcagggcacgtgcagag 26
|||||||||||||| |||||||||||
Sbjct: 9 gttggagaagcaggtcacgtgcagag 34
