miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABXC01001421.1/165860-165981 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 242 bits (122), Expect = 1e-63
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 16 gttaatggggttgttgtctggttcaaggtcgccacagcagacaaagcccattttgcttag 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttaatggggttgttgtctggttcaaggtcgccacagcagacaaagcccattttgcttag 60
Query: 76 catgcagcatgggtttatctctattgatgatcgatctcggaccaggcttcaatcccttta 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catgcagcatgggtttatctctattgatgatcgatctcggaccaggcttcaatcccttta 120
Query: 136 ac 137
||
Sbjct: 121 ac 122
>RF00075;mir-166;BT056134.1/436-541 4577:Zea mays
Length = 106
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 108 gatctcggaccaggcttcaatccctttaac 137
||||||||||||||||||||||||||||||
Sbjct: 77 gatctcggaccaggcttcaatccctttaac 106
>RF00075;mir-166;AY551232.1/7-113 4530:Oryza sativa (rice)
Length = 107
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 108 gatctcggaccaggcttcaatccctttaac 137
||||||||||||||||||||||||||||||
Sbjct: 78 gatctcggaccaggcttcaatccctttaac 107
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 16 gttaatggggttgttgtctggttcaaggtcgccaca 51
||||| ||| |||||||||||||||||||| |||||
Sbjct: 1 gttaaggggattgttgtctggttcaaggtctccaca 36
>RF00075;mir-166;AP004125.3/115130-115014 39947:Oryza sativa
Japonica Group
Length = 117
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 111 ctcggaccaggcttcaatccctttaac 137
|||||||||||||||||||||||||||
Sbjct: 91 ctcggaccaggcttcaatccctttaac 117
>RF00075;mir-166;AAAA02007467.1/8861-8977 39946:Oryza sativa Indica
Group
Length = 117
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 111 ctcggaccaggcttcaatccctttaac 137
|||||||||||||||||||||||||||
Sbjct: 91 ctcggaccaggcttcaatccctttaac 117
>RF00075;mir-166;ABXC01002961.1/62223-62119 4558:Sorghum bicolor
(sorghum)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 112 tcggaccaggcttcaatccctttaac 137
||||||||||||||||||||||||||
Sbjct: 80 tcggaccaggcttcaatccctttaac 105
>RF00075;mir-166;AAAA02025700.1/14722-14582 39946:Oryza sativa
Indica Group
Length = 141
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 111 ctcggaccaggcttcaatccctttaac 137
|||||||||||||||| ||||||||||
Sbjct: 115 ctcggaccaggcttcattccctttaac 141
>RF00075;mir-166;AACV01018689.1/7378-7519 39947:Oryza sativa
Japonica Group
Length = 142
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 111 ctcggaccaggcttcaatccctttaac 137
|||||||||||||||| ||||||||||
Sbjct: 116 ctcggaccaggcttcattccctttaac 142
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tcgatctcggaccaggcttcaatccc 131
||||||||||||||||||||| ||||
Sbjct: 66 tcgatctcggaccaggcttcattccc 91
