miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
(sorghum)
Length = 98
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 ggaatgtcgtctggcgcgagaccggccggacagtcggccggcggcgtcctctggatcgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggaatgtcgtctggcgcgagaccggccggacagtcggccggcggcgtcctctggatcgga 67
Query: 61 cggtctcggaccaggcttcattcccc 86
||||||||||||||||||||||||||
Sbjct: 68 cggtctcggaccaggcttcattcccc 93
>RF00075;mir-166;AY664413.1/238586-238494 4577:Zea mays
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 56 tcggacggtctcggaccaggcttcattcccc 86
|||||||||||||||||||||||||||||||
Sbjct: 58 tcggacggtctcggaccaggcttcattcccc 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggaatgtcgtctggcgcgagaccg 24
||||||||||||||||||||||||
Sbjct: 8 ggaatgtcgtctggcgcgagaccg 31
>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
Japonica Group
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 ggacggtctcggaccaggcttcattcccc 86
|||||||||||||||||||||||||||||
Sbjct: 54 ggacggtctcggaccaggcttcattcccc 82
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 ggacggtctcggaccaggcttcattcccc 86
|||||||||||||||||||||||||||||
Sbjct: 54 ggacggtctcggaccaggcttcattcccc 82
>RF00075;mir-166;AY664417.1/307265-307178 4577:Zea mays
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 ggacggtctcggaccaggcttcattcc 84
|||||||||||||||||||||||||||
Sbjct: 55 ggacggtctcggaccaggcttcattcc 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggaatgtcgtctggcgcgagaccg 24
||||||||||||||||||||||||
Sbjct: 8 ggaatgtcgtctggcgcgagaccg 31
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 98 tctcggaccaggcttcattcccc 120
>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
(papaya)
Length = 125
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 98 tctcggaccaggcttcattcccc 120
>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa
subsp. pekinensis
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 60 tctcggaccaggcttcattcccc 82
>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 91 tctcggaccaggcttcattcccc 113
>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana (thale
cress)
Length = 111
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 84 tctcggaccaggcttcattcccc 106
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 73 tctcggaccaggcttcattcccc 95
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus
trichocarpa
Length = 94
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 67 tctcggaccaggcttcattcccc 89
>RF00075;mir-166;AARH01009662.1/134102-134198 3694:Populus
trichocarpa
Length = 97
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 70 tctcggaccaggcttcattcccc 92
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus
trichocarpa
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 65 tctcggaccaggcttcattcccc 87
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 67 tctcggaccaggcttcattcccc 89
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 80 tctcggaccaggcttcattcccc 102
>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 65 tctcggaccaggcttcattcccc 87
>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 77 tctcggaccaggcttcattcccc 99
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 130 tctcggaccaggcttcattcccc 152
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 63 tctcggaccaggcttcattcccc 85
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 92 tctcggaccaggcttcattcccc 114
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 87 tctcggaccaggcttcattcccc 109
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 70 tctcggaccaggcttcattcccc 92
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 97 tctcggaccaggcttcattcccc 119
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 187 tctcggaccaggcttcattcccc 209
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 91 tctcggaccaggcttcattcccc 113
>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 ggtctcggaccaggcttcattcc 84
|||||||||||||||||||||||
Sbjct: 87 ggtctcggaccaggcttcattcc 109
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 164 tctcggaccaggcttcattcccc 186
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 70 tctcggaccaggcttcattcccc 92
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 133 tctcggaccaggcttcattcccc 155
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 153 tctcggaccaggcttcattcccc 175
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 152 tctcggaccaggcttcattcccc 174
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 94 tctcggaccaggcttcattcccc 116
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattcccc 86
|||||||||||||||||||||||
Sbjct: 76 tctcggaccaggcttcattcccc 98
>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
(papaya)
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattccc 85
||||||||||||||||||||||
Sbjct: 111 tctcggaccaggcttcattccc 132
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus
trichocarpa
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 ctcggaccaggcttcattcccc 86
||||||||||||||||||||||
Sbjct: 62 ctcggaccaggcttcattcccc 83
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 ctcggaccaggcttcattcccc 86
||||||||||||||||||||||
Sbjct: 68 ctcggaccaggcttcattcccc 89
>RF00075;mir-166;AASG02003407.1/927-777 3988:Ricinus communis
(castor bean)
Length = 151
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 ctcggaccaggcttcattcccc 86
||||||||||||||||||||||
Sbjct: 125 ctcggaccaggcttcattcccc 146
>RF00075;mir-166;BABK01008352.1/1692-1590 34305:Lotus japonicus
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 tctcggaccaggcttcattccc 85
||||||||||||||||||||||
Sbjct: 76 tctcggaccaggcttcattccc 97
>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 ctcggaccaggcttcattcccc 86
||||||||||||||||||||||
Sbjct: 79 ctcggaccaggcttcattcccc 100
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 ctcggaccaggcttcattcccc 86
||||||||||||||||||||||
Sbjct: 124 ctcggaccaggcttcattcccc 145
>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 ctcggaccaggcttcattcccc 86
||||||||||||||||||||||
Sbjct: 88 ctcggaccaggcttcattcccc 109
>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
patens subsp. patens
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 ctcggaccaggcttcattcccc 86
||||||||||||||||||||||
Sbjct: 48 ctcggaccaggcttcattcccc 69
