miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
           (sorghum)
          Length = 118

 Score =  234 bits (118), Expect = 2e-61
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                       
Query: 7   tggtgtgagaggttgaagctgccagcatgatctggtggccggccggccggcgtctctcaa 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggtgtgagaggttgaagctgccagcatgatctggtggccggccggccggcgtctctcaa 60

                                                                     
Query: 67  gtgcgctcggatcggagacgcgtcgccagatcatgttgcagcttcactctctcgcaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtgcgctcggatcggagacgcgtcgccagatcatgttgcagcttcactctctcgcaac 118




>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
          bicolor (sorghum)
          Length = 265

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 7  tggtgtgagaggttgaagctgccagcatgatctg 40
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  tggtgtgagaggttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
          Length = 354

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 7  tggtgtgagaggttgaagctgccagcatgatctggtg 43
          |||| ||||||||||||||||||||||||||||||||
Sbjct: 1  tggtttgagaggttgaagctgccagcatgatctggtg 37




>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
          Length = 116

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 92  ccagatcatgttgcagcttcactctctcgcaac 124
           |||||||||||||||||||||||||||||||||
Sbjct: 84  ccagatcatgttgcagcttcactctctcgcaac 116



 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 7  tggtgtgagaggttgaagctgccagcatgatctgg 41
          ||||||||||| |||||||||||||||||||||||
Sbjct: 1  tggtgtgagagcttgaagctgccagcatgatctgg 35




>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
          trichocarpa
          Length = 435

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 7  tggtgtgagaggttgaagctgccagcatgatctggt 42
          |||| |||||||||||||||||||||||||||||||
Sbjct: 1  tggtttgagaggttgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
          Length = 436

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 7  tggtgtgagaggttgaagctgccagcatgatctggt 42
          |||| |||||||||||||||||||||||||||||||
Sbjct: 1  tggtttgagaggttgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
          Indica Group
          Length = 206

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 7  tggtgtgagaggttgaagctgccagcatgatctggt 42
          |||||||||||| |||||||||||||||||||||||
Sbjct: 1  tggtgtgagaggctgaagctgccagcatgatctggt 36



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 93  cagatcatgttgcagcttcactctctc 119
           |||||||||||||||||||||||||||
Sbjct: 175 cagatcatgttgcagcttcactctctc 201




>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
          Length = 154

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 12 tgagaggttgaagctgccagcatgatctggt 42
          |||||||||||||||||||||||||||||||
Sbjct: 6  tgagaggttgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
          (castor bean)
          Length = 343

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 7  tggtgtgagaggttgaagctgccagcatgatctggt 42
          |||| |||||| ||||||||||||||||||||||||
Sbjct: 1  tggtttgagagattgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
          Japonica Group
          Length = 278

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 7  tggtgtgagaggttgaagctgccagcatgatctggt 42
          |||||||||||  |||||||||||||||||||||||
Sbjct: 1  tggtgtgagagaatgaagctgccagcatgatctggt 36



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 93  cagatcatgttgcagcttcactctctc 119
           |||||||||||||||||||||||||||
Sbjct: 247 cagatcatgttgcagcttcactctctc 273




>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
          (castor bean)
          Length = 89

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 18 gttgaagctgccagcatgatctgg 41
          ||||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctgg 35




>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
          (papaya)
          Length = 103

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 18 gttgaagctgccagcatgatctg 40
          |||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
          (thale cress)
          Length = 365

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 tgaagctgccagcatgatctggt 42
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
          (thale cress)
          Length = 387

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 tgaagctgccagcatgatctggt 42
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
          (thale cress)
          Length = 367

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 tgaagctgccagcatgatctggt 42
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
          trichocarpa
          Length = 98

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 18 gttgaagctgccagcatgatctg 40
          |||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
          Length = 229

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 tgaagctgccagcatgatctggt 42
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
          Length = 228

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 tgaagctgccagcatgatctggt 42
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
          (sea-island cotton)
          Length = 93

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 gttgaagctgccagcatgatct 39
          ||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33




>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
          (papaya)
          Length = 94

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 gttgaagctgccagcatgatct 39
          ||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33




>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
          trichocarpa
          Length = 96

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 gttgaagctgccagcatgatct 39
          ||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33




>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
          trichocarpa
          Length = 94

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 gttgaagctgccagcatgatct 39
          ||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33




>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
          trichocarpa
          Length = 96

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 gttgaagctgccagcatgatct 39
          ||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33




>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
          (castor bean)
          Length = 93

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 gttgaagctgccagcatgatct 39
          ||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33




>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
          Length = 92

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 gttgaagctgccagcatgatct 39
          ||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33




>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
          lycopersicum
          Length = 104

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 gttgaagctgccagcatgatct 39
          ||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33




>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
          Length = 97

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 gttgaagctgccagcatgatct 39
          ||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33




>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
          Length = 93

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 gttgaagctgccagcatgatct 39
          ||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33




>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
          Length = 94

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 gttgaagctgccagcatgatct 39
          ||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33




>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
          Length = 102

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 gttgaagctgccagcatgatct 39
          ||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33