miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;ABXC01000844.1/72139-72006 4558:Sorghum bicolor
(sorghum)
Length = 134
Score = 266 bits (134), Expect = 8e-71
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 8 atcctctagtagctgaagctgccagcatgatctgatgaggtgaggtttatttgctagttg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcctctagtagctgaagctgccagcatgatctgatgaggtgaggtttatttgctagttg 60
Query: 68 gtcacaggctaacagcatgatggcccaacaaatcaacgatcagatcatgctgtgcagttt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcacaggctaacagcatgatggcccaacaaatcaacgatcagatcatgctgtgcagttt 120
Query: 128 catctgctcgtgga 141
||||||||||||||
Sbjct: 121 catctgctcgtgga 134
>RF00640;MIR167_1;AP003800.3/19613-19499 39947:Oryza sativa Japonica
Group
Length = 115
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 96 caaatcaacgatcagatcatgctgtgcagtttcatctgctcgtgg 140
|||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 70 caaaacaaagatcagatcatgctgtgcagtttcatctgcttgtgg 114
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 agctgaagctgccagcatgatctgatgag 46
|||||||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctgatgag 39
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ctagtagctgaagctgccagcatgatctga 42
||||||| ||||||||||||||||||||||
Sbjct: 6 ctagtagttgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 18 agctgaagctgccagcatgatctgat 43
||||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 18 agctgaagctgccagcatgatctgat 43
||||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
Group
Length = 125
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgatga 45
|||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgatga 38
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 agctgaagctgccagcatgatctg 41
||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 agctgaagctgccagcatgatctg 41
||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 agctgaagctgccagcatgatctg 41
||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgatg 44
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgatg 37
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 gctgaagctgccagcatgatctg 41
|||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgat 43
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctga 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctga 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctga 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
bicolor (sorghum)
Length = 113
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctga 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctga 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
