miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 327 bits (165), Expect = 3e-89
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 8 caccacaagttggtgaagctgccagcatgatctgatgtctttatatatattaattacctc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccacaagttggtgaagctgccagcatgatctgatgtctttatatatattaattacctc 60
Query: 68 tgatttctccctgactgttatggatcgatgaattcagatatgaggggaaggaagaaagag 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgatttctccctgactgttatggatcgatgaattcagatatgaggggaaggaagaaagag 120
Query: 128 gaataatgagcatcaggtcatgctgtagtttcatccgctggtggg 172
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaataatgagcatcaggtcatgctgtagtttcatccgctggtggg 165
>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
Group
Length = 125
Score = 73.8 bits (37), Expect = 7e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 8 caccacaagttggtgaagctgccagcatgatctgatg 44
|||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccacaagttggtgaagctgccagcatgatctgatg 37
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 139 atcaggtcatgctgtagtttcatccgctggt 169
|||||||||||||||||||||||| ||||||
Sbjct: 92 atcaggtcatgctgtagtttcatctgctggt 122
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 8 caccacaagttggtgaagctgccagcatgatctg 41
|||||| |||||||||||||||||||||||||||
Sbjct: 1 caccacgagttggtgaagctgccagcatgatctg 34
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 141 caggtcatgctgtagtttcatccgctggtgg 171
|||||||||||||||||||||| ||||||||
Sbjct: 198 caggtcatgctgtagtttcatctgctggtgg 228
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 8 caccacaagttggtgaagctgccagcatgatctg 41
|||||| |||||||||||||||||||||||||||
Sbjct: 1 caccacgagttggtgaagctgccagcatgatctg 34
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 141 caggtcatgctgtagtttcatccgctggtgg 171
|||||||||||||||||||||| ||||||||
Sbjct: 197 caggtcatgctgtagtttcatctgctggtgg 227
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 8 caccacaagttggtgaagctgccagcatgatctgat 43
|||||||||| | |||||||||||||||||||||||
Sbjct: 1 caccacaagtggatgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;ABXC01000844.1/72139-72006 4558:Sorghum bicolor
(sorghum)
Length = 134
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgatg 44
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgatg 37
>RF00640;MIR167_1;AP003800.3/19613-19499 39947:Oryza sativa
Japonica Group
Length = 115
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgatg 44
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgatg 37
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 ggtgaagctgccagcatgatctga 42
||||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 8 caccacaagttggtgaagctgccagcatgatctga 42
|||||| ||| | ||||||||||||||||||||||
Sbjct: 1 caccactagtagttgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgat 43
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgat 43
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctga 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ggtgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ggtgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctga 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctga 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
bicolor (sorghum)
Length = 113
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctga 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
