miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;ABXC01001391.1/122512-122383 4558:Sorghum bicolor
           (sorghum)
          Length = 130

 Score =  216 bits (109), Expect = 4e-56
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagccaaggatgacttgccggcatttcttgggtcggatgactgagttgttgagcctgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  tagccaaggatgacttgccggcatttcttgggtcggatgactgagttgttgagcctgggg 70

                                                            
Query: 61  atgaacagacccggatcgacggccggccggcaagtcatctgtggctacg 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  atgaacagacccggatcgacggccggccggcaagtcatctgtggctacg 119




>RF00865;MIR169_5;ABXC01001391.1/122449-122522 4558:Sorghum
          bicolor (sorghum)
          Length = 74

 Score =  107 bits (54), Expect = 3e-23
 Identities = 54/54 (100%)
 Strand = Plus / Minus

                                                                
Query: 1  tagccaaggatgacttgccggcatttcttgggtcggatgactgagttgttgagc 54
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 tagccaaggatgacttgccggcatttcttgggtcggatgactgagttgttgagc 1




>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
          trichocarpa
          Length = 112

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 2  agccaaggatgacttgccggcatttc 27
          ||||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcatttc 38




>RF00645;MIR169_2;AARH01002993.1/21348-21232 3694:Populus
          trichocarpa
          Length = 117

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 2  agccaaggatgacttgccggcatttc 27
          ||||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcatttc 38




>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
          Length = 97

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 2  agccaaggatgacttgccggcattt 26
          |||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcattt 37




>RF00645;MIR169_2;BABK01005902.1/1720-1822 34305:Lotus japonicus
          Length = 103

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 2  agccaaggatgacttgccggcatt 25
          ||||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccggcatt 38




>RF00645;MIR169_2;BABK01004287.1/2937-3041 34305:Lotus japonicus
          Length = 105

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 2  agccaaggatgacttgccggcatt 25
          ||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcatt 36




>RF00645;MIR169_2;BABK01035994.1/667-569 34305:Lotus japonicus
          Length = 99

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 2  agccaaggatgacttgccggcatt 25
          ||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcatt 36




>RF00645;MIR169_2;AASG02000349.1/3893-3789 3988:Ricinus communis
          (castor bean)
          Length = 105

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 2  agccaaggatgacttgccggcat 24
          |||||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccggcat 36




>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
          Length = 115

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 2  agccaaggatgacttgccggcat 24
          |||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcat 35




>RF00645;MIR169_2;BABK01041096.1/153-266 34305:Lotus japonicus
          Length = 114

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 2  agccaaggatgacttgccggcat 24
          |||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcat 35




>RF00645;MIR169_2;ABIM01024501.1/10588-10497 3649:Carica papaya
          (papaya)
          Length = 92

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tagccaaggatgacttgccggc 22
          ||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgccggc 33




>RF00645;MIR169_2;ABIM01004543.1/8825-9065 3649:Carica papaya
          (papaya)
          Length = 241

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccggca 36




>RF00645;MIR169_2;AARH01011492.1/38551-38428 3694:Populus
          trichocarpa
          Length = 124

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34




>RF00645;MIR169_2;AARH01010231.1/110431-110554 3694:Populus
          trichocarpa
          Length = 124

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34




>RF00645;MIR169_2;AARH01003557.1/353551-353722 3694:Populus
          trichocarpa
          Length = 172

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34




>RF00645;MIR169_2;AASG02000866.1/18426-18322 3988:Ricinus communis
          (castor bean)
          Length = 105

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34




>RF00645;MIR169_2;AC232769.1/98561-98655 4081:Solanum lycopersicum
          Length = 95

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggca 37




>RF00645;MIR169_2;AM489765.1/426-571 4102:Petunia x hybrida
          Length = 146

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggca 37




>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
          Length = 102

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34




>RF00645;MIR169_2;AM476671.2/16778-16661 29760:Vitis vinifera
          Length = 118

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  tagccaaggatgacttgccggcattt 26
          |||||||||||||||||| |||||||
Sbjct: 12 tagccaaggatgacttgctggcattt 37




>RF00645;MIR169_2;CAAP02000146.1/54492-54392 29760:Vitis vinifera
          Length = 101

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34




>RF00645;MIR169_2;AM488283.1/32022-31880 29760:Vitis vinifera
          Length = 143

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccggca 36




>RF00645;MIR169_2;AM444055.2/7771-7675 29760:Vitis vinifera
          Length = 97

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34




>RF00645;MIR169_2;ABXC01002876.1/68453-68594 4558:Sorghum bicolor
          (sorghum)
          Length = 142

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tagccaaggatgacttgccggc 22
          ||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgccggc 33




>RF00645;MIR169_2;AAAA02007387.1/24033-23898 39946:Oryza sativa
          Indica Group
          Length = 136

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tagccaaggatgacttgccggc 22
          ||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgccggc 33




>RF00645;MIR169_2;AP008208.1/31224491-31224356 39947:Oryza sativa
          Japonica Group
          Length = 136

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tagccaaggatgacttgccggc 22
          ||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgccggc 33