miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;ABXC01002768.1/23520-23657 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctagctatatgcctgagagcctgtctcttggtggtaaatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tagccaaggatgacttgcctagctatatgcctgagagcctgtctcttggtggtaaatttg 57
Query: 61 tatgtgctgagcatataggcatgtcttccttggctact 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 56 tatgtgctgagcatataggcatgtcttccttggctact 19
>RF00645;MIR169_2;ABXC01002768.1/23650-23526 4558:Sorghum bicolor
(sorghum)
Length = 125
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctagctatatgcctgagagcctgtctcttggtggtaaatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 tagccaaggatgacttgcctagctatatgcctgagagcctgtctcttggtggtaaatttg 75
Query: 61 tatgtgctgagcatataggcatgtcttccttggctact 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tatgtgctgagcatataggcatgtcttccttggctact 113
>RF00865;MIR169_5;CU468266.5/4267-4422 3880:Medicago truncatula
(barrel medic)
Length = 156
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctagcta 25
|||||||||||||||||||||||||
Sbjct: 136 tagccaaggatgacttgcctagcta 112
>RF00645;MIR169_2;CU468266.5/4414-4273 3880:Medicago truncatula
(barrel medic)
Length = 142
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctagcta 25
|||||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctagcta 37
>RF00865;MIR169_5;AP008208.1/18658095-18658282 39947:Oryza sativa
Japonica Group
Length = 188
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 73 atataggcatgtcttccttggcta 96
||||||||||||||||||||||||
Sbjct: 44 atataggcatgtcttccttggcta 21
>RF00645;MIR169_2;AC146747.7/125787-125634 3880:Medicago
truncatula (barrel medic)
Length = 154
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgcctagcta 25
||||||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgcctagcta 37
>RF00645;MIR169_2;AP004062.3/84631-84457 39947:Oryza sativa Japonica
Group
Length = 175
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 atataggcatgtcttccttggcta 96
||||||||||||||||||||||||
Sbjct: 138 atataggcatgtcttccttggcta 161
