miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;ABXC01003263.1/1171-1002 4558:Sorghum bicolor
(sorghum)
Length = 170
Score = 335 bits (169), Expect = 1e-91
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 1 gatggagagcccccttttgctagccaagaatgacttgcctatgcatgccctctgttggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gatggagagcccccttttgctagccaagaatgacttgcctatgcatgccctctgttggca 110
Query: 61 attcctccagccatggagattgcacaaggtgaatttttgcggcatagatgatggatgcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 attcctccagccatggagattgcacaaggtgaatttttgcggcatagatgatggatgcaa 50
Query: 121 tgtggctgcatgggcaggtcttcttggctagccagagtgctctcatcca 169
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 tgtggctgcatgggcaggtcttcttggctagccagagtgctctcatcca 1
>RF00865;MIR169_5;EU941000.1/258-87 4577:Zea mays
Length = 172
Score = 141 bits (71), Expect = 4e-33
Identities = 153/176 (86%), Gaps = 12/176 (6%)
Strand = Plus / Minus
Query: 1 gatggagagcccccttttgctagccaagaatgacttgcctatgcatgccctctgttggca 60
||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 171 gatggagagcccc-ttttggtagccaagaatgacttgcctatgcacgccctctgttggca 113
Query: 61 attcc-tc---cagccatggaga---ttgcacaaggtgaatttttgcggcatagatgatg 113
|||| || ||||||||| || ||||||||||||| |||||||||| | || |
Sbjct: 112 gttccgtccggcagccatggcgacggttgcacaaggtgagtttttgcggcgtgga----g 57
Query: 114 gatgcaatgtggctgcatgggcaggtcttcttggctagccagagtgctctcatcca 169
||||||||| |||||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct: 56 gatgcaatgcggctgcatcggcaggtcttcttggctagccagagggctctcgtcca 1
>RF00645;MIR169_2;EU941000.1/95-252 4577:Zea mays
Length = 158
Score = 133 bits (67), Expect = 9e-31
Identities = 139/160 (86%), Gaps = 11/160 (6%)
Strand = Plus / Plus
Query: 11 ccccttttgctagccaagaatgacttgcctatgcatgccctctgttggcaattcc-tc-- 67
||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| ||
Sbjct: 3 ccccttttggtagccaagaatgacttgcctatgcacgccctctgttggcagttccgtccg 62
Query: 68 -cagccatggaga---ttgcacaaggtgaatttttgcggcatagatgatggatgcaatgt 123
||||||||| || ||||||||||||| |||||||||| | || ||||||||||
Sbjct: 63 gcagccatggcgacggttgcacaaggtgagtttttgcggcgtgga----ggatgcaatgc 118
Query: 124 ggctgcatgggcaggtcttcttggctagccagagtgctct 163
|||||||| ||||||||||||||||||||||||| |||||
Sbjct: 119 ggctgcatcggcaggtcttcttggctagccagagggctct 158
>RF00865;MIR169_5;AAAA02031014.1/17953-17766 39946:Oryza sativa
Indica Group
Length = 188
Score = 85.7 bits (43), Expect = 2e-16
Identities = 53/55 (96%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 116 tgcaatgtggctgcatgggcaggtcttcttggctagccagagt-gctctcatcca 169
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 55 tgcaatgtggctgcatgggccggtcttcttggctagccagagtggctctcatcca 1
Score = 54.0 bits (27), Expect = 6e-07
Identities = 42/46 (91%), Gaps = 2/46 (4%)
Strand = Plus / Minus
Query: 16 tttgctagccaagaatgacttgcctatgc--atgccctctgttggc 59
|||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 170 tttggtagccaagaatgacttgcctatgcttttgccctctgttggc 125
>RF00865;MIR169_5;AC123517.2/63512-63700 39947:Oryza sativa Japonica
Group
Length = 189
Score = 79.8 bits (40), Expect = 1e-14
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 116 tgcaatgtggctgcatgggcaggtcttcttggctagccagagtg 159
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 50 tgcaatgtggctgcatgggccggtcttcttggctagccagagtg 7
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 16 tttgctagccaagaatgacttgcctatg 43
|||| |||||||||||||||||||||||
Sbjct: 176 tttggtagccaagaatgacttgcctatg 149
>RF00865;MIR169_5;AC123517.2/59786-59972 39947:Oryza sativa Japonica
Group
Length = 187
Score = 71.9 bits (36), Expect = 3e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 116 tgcaatgtggctgcatgggcaggtcttcttggctagccagagtg 159
||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 52 tgcaatgaggctgcatgggccggtcttcttggctagccagagtg 9
Score = 46.1 bits (23), Expect = 2e-04
Identities = 41/46 (89%), Gaps = 2/46 (4%)
Strand = Plus / Minus
Query: 16 tttgctagccaagaatgacttgcctatgc--atgccctctgttggc 59
|||| ||||||||||||||||||||| || ||||||||||||||
Sbjct: 174 tttggtagccaagaatgacttgcctacgcttttgccctctgttggc 129
