miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;ABXC01005012.1/7179-7306 4558:Sorghum bicolor
           (sorghum)
          Length = 128

 Score =  182 bits (92), Expect = 5e-46
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tagccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctag 50

                                           
Query: 61  tggtctcatatgggcagtctccttggctagcc 92
           ||||||||||||||||||||||||||||||||
Sbjct: 49  tggtctcatatgggcagtctccttggctagcc 18




>RF00645;MIR169_2;ABXC01005012.1/7295-7185 4558:Sorghum bicolor
           (sorghum)
          Length = 111

 Score =  182 bits (92), Expect = 5e-46
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   tagccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctag 68

                                           
Query: 61  tggtctcatatgggcagtctccttggctagcc 92
           ||||||||||||||||||||||||||||||||
Sbjct: 69  tggtctcatatgggcagtctccttggctagcc 100




>RF00865;MIR169_5;ABXC01005012.1/10458-10330 4558:Sorghum bicolor
           (sorghum)
          Length = 129

 Score =  121 bits (61), Expect = 2e-27
 Identities = 85/92 (92%), Gaps = 2/92 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctag 60
           ||||||||||||||||||||||||||||| | |||||||||||||||| |||||||  ||
Sbjct: 107 tagccaaggatgacttgcctatatcctctatgaaggatcagcaaatatcgaggctttgag 48

                                           
Query: 61  tggtctcatatgggcagtctccttggctagcc 92
           |||||||  |||||||||||||||||||||||
Sbjct: 47  tggtctc--atgggcagtctccttggctagcc 18




>RF00645;MIR169_2;ABXC01005012.1/10344-10452 4558:Sorghum bicolor
          (sorghum)
          Length = 109

 Score =  121 bits (61), Expect = 2e-27
 Identities = 85/92 (92%), Gaps = 2/92 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tagccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctag 60
          ||||||||||||||||||||||||||||| | |||||||||||||||| |||||||  ||
Sbjct: 9  tagccaaggatgacttgcctatatcctctatgaaggatcagcaaatatcgaggctttgag 68

                                          
Query: 61 tggtctcatatgggcagtctccttggctagcc 92
          |||||||  |||||||||||||||||||||||
Sbjct: 69 tggtctc--atgggcagtctccttggctagcc 98




>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
           trichocarpa
          Length = 143

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 1   tagccaaggatgacttgcctatatcctc 28
           |||||||||||||||||||||| |||||
Sbjct: 121 tagccaaggatgacttgcctatttcctc 94




>RF00865;MIR169_5;AASG02006505.1/277-428 3988:Ricinus communis
           (castor bean)
          Length = 152

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 1   tagccaaggatgacttgcctatatcctc 28
           |||||||||||||||||||||| |||||
Sbjct: 132 tagccaaggatgacttgcctatttcctc 105




>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
           Indica Group
          Length = 128

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 1   tagccaaggatgacttgcctatatcctctctaaaggatcagcaa 44
           |||||||||||||||||||| | ||||| || |||||| |||||
Sbjct: 108 tagccaaggatgacttgcctgtgtcctccctgaaggattagcaa 65



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 70 atgggcagtctccttggctagcc 92
          |||||||||||||||||||||||
Sbjct: 40 atgggcagtctccttggctagcc 18




>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
          trichocarpa
          Length = 130

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 1  tagccaaggatgacttgcctatatcctc 28
          |||||||||||||||||||||| |||||
Sbjct: 16 tagccaaggatgacttgcctatttcctc 43




>RF00645;MIR169_2;AASG02006505.1/420-283 3988:Ricinus communis
          (castor bean)
          Length = 138

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 1  tagccaaggatgacttgcctatatcctc 28
          |||||||||||||||||||||| |||||
Sbjct: 13 tagccaaggatgacttgcctatttcctc 40




>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
          Indica Group
          Length = 111

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                      
Query: 1  tagccaaggatgacttgcctatatcctctctaaaggatcagcaa 44
          |||||||||||||||||||| | ||||| || |||||| |||||
Sbjct: 10 tagccaaggatgacttgcctgtgtcctccctgaaggattagcaa 53



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 70  atgggcagtctccttggctagcc 92
           |||||||||||||||||||||||
Sbjct: 78  atgggcagtctccttggctagcc 100




>RF00865;MIR169_5;ABXC01005011.1/62536-62662 4558:Sorghum bicolor
           (sorghum)
          Length = 127

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 1   tagccaaggatgacttgcctatatcct 27
           |||||||||||||||||||||| ||||
Sbjct: 107 tagccaaggatgacttgcctatgtcct 81




>RF00865;MIR169_5;AK240880.1/275-135 39947:Oryza sativa Japonica
          Group
          Length = 141

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 70 atgggcagtctccttggctagcc 92
          |||||||||||||||||||||||
Sbjct: 40 atgggcagtctccttggctagcc 18




>RF00645;MIR169_2;CT835986.1/139-261 39946:Oryza sativa Indica Group
          Length = 123

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 70  atgggcagtctccttggctagcc 92
           |||||||||||||||||||||||
Sbjct: 90  atgggcagtctccttggctagcc 112




>RF00865;MIR169_5;CAAP02000122.1/24661-24522 29760:Vitis vinifera
          Length = 140

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 1   tagccaaggatgacttgcctatatcc 26
           ||||||||||||||||||||| ||||
Sbjct: 121 tagccaaggatgacttgcctaaatcc 96




>RF00865;MIR169_5;AACV01009625.1/5578-5722 39947:Oryza sativa
           Japonica Group
          Length = 145

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 1   tagccaaggatgacttgcctat 22
           ||||||||||||||||||||||
Sbjct: 125 tagccaaggatgacttgcctat 104




>RF00645;MIR169_2;CAAP02000122.1/24529-24655 29760:Vitis vinifera
          Length = 127

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  tagccaaggatgacttgcctatatcc 26
          ||||||||||||||||||||| ||||
Sbjct: 13 tagccaaggatgacttgcctaaatcc 38




>RF00645;MIR169_2;BT062831.1/323-237 4577:Zea mays
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 2  agccaaggatgacttgcctatatcct 27
          ||||||||||||||||||||| ||||
Sbjct: 1  agccaaggatgacttgcctatgtcct 26




>RF00645;MIR169_2;ABXC01005011.1/62641-62556 4558:Sorghum bicolor
          (sorghum)
          Length = 86

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 2  agccaaggatgacttgcctatatcct 27
          ||||||||||||||||||||| ||||
Sbjct: 1  agccaaggatgacttgcctatgtcct 26




>RF00645;MIR169_2;AP008210.1/19428619-19428750 39947:Oryza sativa
          Japonica Group
          Length = 132

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tagccaaggatgacttgcctat 22
          ||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctat 35