miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;ABXC01000010.1/150949-151088 4558:Sorghum bicolor
(sorghum)
Length = 140
Score = 204 bits (103), Expect = 2e-52
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 1 atagccaaggatgatttgcctgtagcaacctctgagtgctcctgctgccatggcagtcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atagccaaggatgatttgcctgtagcaacctctgagtgctcctgctgccatggcagtcag 62
Query: 61 gagcgccaagtgggtgcttctccgggcaaatcatctgggctag 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagcgccaagtgggtgcttctccgggcaaatcatctgggctag 19
>RF00645;MIR169_2;ABXC01000010.1/151081-150955 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 204 bits (103), Expect = 2e-52
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 atagccaaggatgatttgcctgtagcaacctctgagtgctcctgctgccatggcagtcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 atagccaaggatgatttgcctgtagcaacctctgagtgctcctgctgccatggcagtcag 72
Query: 61 gagcgccaagtgggtgcttctccgggcaaatcatctgggctag 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 gagcgccaagtgggtgcttctccgggcaaatcatctgggctag 115
>RF00865;MIR169_5;ABXC01000010.1/151290-151438 4558:Sorghum bicolor
(sorghum)
Length = 149
Score = 115 bits (58), Expect = 1e-25
Identities = 98/111 (88%), Gaps = 9/111 (8%)
Strand = Plus / Minus
Query: 2 tagccaaggatgatttgcctgtagc----aacctctgagtgctcctgctgccatggca-- 55
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 129 tagccaaggatgatttgcctgtagctagcaacctctgagcgctcctgctgccatggcatg 70
Query: 56 ---gtcaggagcgccaagtgggtgcttctccgggcaaatcatctgggctag 103
|||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 69 gcagtcaggggcgcgtagtgggtgcttctccgggcaaatcatctgggctag 19
>RF00645;MIR169_2;ABXC01000010.1/151431-151296 4558:Sorghum bicolor
(sorghum)
Length = 136
Score = 115 bits (58), Expect = 1e-25
Identities = 98/111 (88%), Gaps = 9/111 (8%)
Strand = Plus / Plus
Query: 2 tagccaaggatgatttgcctgtagc----aacctctgagtgctcctgctgccatg----- 52
||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 14 tagccaaggatgatttgcctgtagctagcaacctctgagcgctcctgctgccatggcatg 73
Query: 53 gcagtcaggagcgccaagtgggtgcttctccgggcaaatcatctgggctag 103
||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 74 gcagtcaggggcgcgtagtgggtgcttctccgggcaaatcatctgggctag 124
>RF00865;MIR169_5;AC096688.4/11614-11485 39947:Oryza sativa Japonica
Group
Length = 130
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1 atagccaaggatgatttgcctgtagc 26
||||||||||||||||||||||||||
Sbjct: 111 atagccaaggatgatttgcctgtagc 86
