miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
           (sorghum)
          Length = 144

 Score =  285 bits (144), Expect = 9e-77
 Identities = 144/144 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  gagagagtgcgatgttggcatggttcaatcaaatcatcgcccggcaaggtgacttaaatt 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gagagagtgcgatgttggcatggttcaatcaaatcatcgcccggcaaggtgacttaaatt 60

                                                                       
Query: 71  ttgcgctttcgatcgatcgaggtgcagggaggtgtttccaggcaccgtgtttgattgagc 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttgcgctttcgatcgatcgaggtgcagggaggtgtttccaggcaccgtgtttgattgagc 120

                                   
Query: 131 cgtgccaatatcacaaccttctct 154
           ||||||||||||||||||||||||
Sbjct: 121 cgtgccaatatcacaaccttctct 144




>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
          Length = 134

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 121 ttgattgagccgtgccaatatcacaaccttctct 154
           ||||||||||||||||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatatcacaaccttctct 134



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 11 gagagagtgcgatgttggcatggttcaatcaa 42
          ||||||||||||||||||||||| ||||||||
Sbjct: 1  gagagagtgcgatgttggcatggctcaatcaa 32




>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
          Length = 135

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 121 ttgattgagccgtgccaatatcacaaccttctct 154
           ||||||||||||||||||||||||||||||||||
Sbjct: 102 ttgattgagccgtgccaatatcacaaccttctct 135



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 11 gagagagtgcgatgttggcatggttcaatcaa 42
          ||||||||||||||||||||||| ||||||||
Sbjct: 1  gagagagtgcgatgttggcatggctcaatcaa 32




>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
          Japonica Group
          Length = 129

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 13 gagagtgcgatgttggcatggttcaatcaaa 43
          |||||||||||||||||||||||||||||||
Sbjct: 3  gagagtgcgatgttggcatggttcaatcaaa 33



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 122 tgattgagccgtgccaatatcacaa 146
           |||||||||||||||||||||||||
Sbjct: 97  tgattgagccgtgccaatatcacaa 121




>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
           (papaya)
          Length = 99

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 118 tgtttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||||
Sbjct: 63  tgtttgattgagccgtgccaatatcac 89




>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
          Length = 82

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 118 tgtttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||||
Sbjct: 56  tgtttgattgagccgtgccaatatcac 82




>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
           (castor bean)
          Length = 99

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 118 tgtttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||||
Sbjct: 63  tgtttgattgagccgtgccaatatcac 89




>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
          Length = 98

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 118 tgtttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||||
Sbjct: 62  tgtttgattgagccgtgccaatatcac 88




>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
          Length = 144

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 117 gtgtttgattgagccgtgccaatatc 142
           ||||||||||||||||||||||||||
Sbjct: 107 gtgtttgattgagccgtgccaatatc 132




>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
          Length = 102

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 120 tttgattgagccgtgccaatatcaca 145
           ||||||||||||||||||||||||||
Sbjct: 68  tttgattgagccgtgccaatatcaca 93




>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
           (papaya)
          Length = 104

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 120 tttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||
Sbjct: 70  tttgattgagccgtgccaatatcac 94




>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
           (papaya)
          Length = 100

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 120 tttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||
Sbjct: 66  tttgattgagccgtgccaatatcac 90




>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
           (thale cress)
          Length = 101

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 120 tttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||
Sbjct: 67  tttgattgagccgtgccaatatcac 91




>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
           (castor bean)
          Length = 100

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 120 tttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||
Sbjct: 66  tttgattgagccgtgccaatatcac 90




>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
          (castor bean)
          Length = 101

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 21 gatgttggcatggttcaatcaaatc 45
          |||||||||||||||||||||||||
Sbjct: 11 gatgttggcatggttcaatcaaatc 35




>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago truncatula
           (barrel medic)
          Length = 104

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 120 tttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||
Sbjct: 70  tttgattgagccgtgccaatatcac 94




>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
          Length = 100

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 120 tttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||
Sbjct: 66  tttgattgagccgtgccaatatcac 90




>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
          Length = 101

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 120 tttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||
Sbjct: 67  tttgattgagccgtgccaatatcac 91




>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum bicolor
           (sorghum)
          Length = 101

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 120 tttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||
Sbjct: 67  tttgattgagccgtgccaatatcac 91




>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
          Length = 102

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 120 tttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||
Sbjct: 68  tttgattgagccgtgccaatatcac 92




>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa Japonica
           Group
          Length = 101

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 120 tttgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||||
Sbjct: 67  tttgattgagccgtgccaatatcac 91




>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
          (papaya)
          Length = 113

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 gatgttggcatggttcaatcaaat 44
          ||||||||||||||||||||||||
Sbjct: 10 gatgttggcatggttcaatcaaat 33



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 122 tgattgagccgtgccaatatca 143
           ||||||||||||||||||||||
Sbjct: 83  tgattgagccgtgccaatatca 104




>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
           (barrel medic)
          Length = 117

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 119 gtttgattgagccgtgccaatatc 142
           ||||||||||||||||||||||||
Sbjct: 82  gtttgattgagccgtgccaatatc 105




>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
          Length = 114

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 119 gtttgattgagccgtgccaatatc 142
           ||||||||||||||||||||||||
Sbjct: 79  gtttgattgagccgtgccaatatc 102




>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
           (papaya)
          Length = 143

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 120 tttgattgagccgtgccaatatc 142
           |||||||||||||||||||||||
Sbjct: 109 tttgattgagccgtgccaatatc 131




>RF00643;MIR171_1;FM163807.1/196-297 3702:Arabidopsis thaliana
           (thale cress)
          Length = 102

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 118 tgtttgattgagccgtgccaatatcac 144
           |||| ||||||||||||||||||||||
Sbjct: 66  tgttcgattgagccgtgccaatatcac 92




>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
          Length = 112

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 120 tttgattgagccgtgccaatatc 142
           |||||||||||||||||||||||
Sbjct: 88  tttgattgagccgtgccaatatc 110




>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
          Length = 85

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 122 tgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||
Sbjct: 63  tgattgagccgtgccaatatcac 85




>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
           (castor bean)
          Length = 138

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 120 tttgattgagccgtgccaatatc 142
           |||||||||||||||||||||||
Sbjct: 104 tttgattgagccgtgccaatatc 126




>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
           (castor bean)
          Length = 125

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 120 tttgattgagccgtgccaatatc 142
           |||||||||||||||||||||||
Sbjct: 91  tttgattgagccgtgccaatatc 113




>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
          Length = 114

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 120 tttgattgagccgtgccaatatc 142
           |||||||||||||||||||||||
Sbjct: 80  tttgattgagccgtgccaatatc 102




>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
          Length = 134

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 120 tttgattgagccgtgccaatatc 142
           |||||||||||||||||||||||
Sbjct: 100 tttgattgagccgtgccaatatc 122




>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
          Length = 118

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 120 tttgattgagccgtgccaatatc 142
           |||||||||||||||||||||||
Sbjct: 84  tttgattgagccgtgccaatatc 106




>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
          Length = 112

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 122 tgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||
Sbjct: 80  tgattgagccgtgccaatatcac 102




>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
           (sorghum)
          Length = 115

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 122 tgattgagccgtgccaatatcac 144
           |||||||||||||||||||||||
Sbjct: 83  tgattgagccgtgccaatatcac 105




>RF00643;MIR171_1;CR962130.3/48254-48370 3880:Medicago truncatula
           (barrel medic)
          Length = 117

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 120 tttgattgagccgtgccaatat 141
           ||||||||||||||||||||||
Sbjct: 83  tttgattgagccgtgccaatat 104




>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
          Length = 102

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 122 tgattgagccgtgccaatatca 143
           ||||||||||||||||||||||
Sbjct: 70  tgattgagccgtgccaatatca 91




>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
          Length = 99

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 122 tgattgagccgtgccaatatca 143
           ||||||||||||||||||||||
Sbjct: 67  tgattgagccgtgccaatatca 88




>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
          Length = 97

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 122 tgattgagccgtgccaatatca 143
           ||||||||||||||||||||||
Sbjct: 65  tgattgagccgtgccaatatca 86