miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 228 bits (115), Expect = 1e-59
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 11 cgcgcgacggggtattggcgcggttcaattcgagagctcgagccctagactagacgccag 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcgcgacggggtattggcgcggttcaattcgagagctcgagccctagactagacgccag 60
Query: 71 ggagagagggggctctgctctctgattgagccgtgccaatatcacgtcccgcttg 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggagagagggggctctgctctctgattgagccgtgccaatatcacgtcccgcttg 115
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 123 bits (62), Expect = 6e-28
Identities = 96/105 (91%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 16 gacggggtattggcgcggttcaattcgagagctcgagccctagactagacgccagggaga 75
|||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct: 6 gacggggtattgacgcggttcaattcgagagctcgagccctag--cagaggccaggg-gg 62
Query: 76 gagggggctctgctctctgattgagccgtgccaatatcacgtccc 120
| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ggtggggctctgctctctgattgagccgtgccaatatcacgtccc 107
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 79 ggggctctgctctctgattgagccgtgccaatatcacgtcc 119
||||||| |||| |||||||||||||||||||||||||||
Sbjct: 55 ggggctccactctttgattgagccgtgccaatatcacgtcc 95
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa Japonica
Group
Length = 101
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 79 ggggctctgctctctgattgagccgtgccaatatcacgtc 118
||||||| |||| ||||||||||||||||||||||||||
Sbjct: 55 ggggctccactctttgattgagccgtgccaatatcacgtc 94
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgtcc 119
|||||||||||||||||||||||||||
Sbjct: 66 tgattgagccgtgccaatatcacgtcc 92
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 84 tctgctctctgattgagccgtgccaatatcacgt 117
|||||| | |||||||||||||||||||||||||
Sbjct: 59 tctgctttttgattgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 80 gggctctgctctctgattgagccgtgccaatatcacgt 117
|||| ||||| | |||||||||||||||||||||||||
Sbjct: 55 gggccctgctttttgattgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgtc 118
||||||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcacgtc 95
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgt 117
|||||||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatcacgt 96
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgt 117
|||||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcacgt 91
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatcac 115
|||||||||||||||||||||||||
Sbjct: 61 tctgattgagccgtgccaatatcac 85
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 tctctgattgagccgtgccaatatc 113
|||||||||||||||||||||||||
Sbjct: 97 tctctgattgagccgtgccaatatc 121
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgt 117
|||||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcacgt 91
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgt 117
|||||||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatcacgt 96
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgt 117
|||||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgt 117
|||||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatcacgt 93
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatcac 115
|||||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatcac 119
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatca 114
||||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatca 104
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacg 116
||||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatcacg 92
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatca 114
||||||||||||||||||||||||
Sbjct: 68 tctgattgagccgtgccaatatca 91
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatca 114
||||||||||||||||||||||||
Sbjct: 65 tctgattgagccgtgccaatatca 88
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatca 114
||||||||||||||||||||||||
Sbjct: 63 tctgattgagccgtgccaatatca 86
>RF00643;MIR171_1;FM163807.1/196-297 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gattgagccgtgccaatatcacg 116
|||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 54 tctgattgagccgtgccaatatc 76
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcac 115
|||||||||||||||||||||||
Sbjct: 60 tgattgagccgtgccaatatcac 82
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 64 tctgattgagccgtgccaatatc 86
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatcacgt 117
||||||||||||| |||||||||||||
Sbjct: 68 tctgattgagccgcgccaatatcacgt 94
>RF00643;MIR171_1;AC215407.2/42962-42863 4081:Solanum lycopersicum
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 attgagccgtgccaatatcacgt 117
|||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcac 115
|||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcac 92
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tctctgattgagccgtgccaatatcac 115
||||||||||||||| |||||||||||
Sbjct: 65 tctctgattgagccgcgccaatatcac 91
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcac 115
|||||||||||||||||||||||
Sbjct: 102 tgattgagccgtgccaatatcac 124
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcac 115
|||||||||||||||||||||||
Sbjct: 103 tgattgagccgtgccaatatcac 125
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcac 115
|||||||||||||||||||||||
Sbjct: 112 tgattgagccgtgccaatatcac 134
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 102 tctgattgagccgtgccaatatc 124
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
