miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 214 bits (108), Expect = 2e-55
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 gcgagcgatattggtgaggttcaatcagatcatcagatgatgtattttaaatttacatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gcgagcgatattggtgaggttcaatcagatcatcagatgatgtattttaaatttacatgc 64
Query: 61 atgaaggtgaatccccagggactgattgagccgcgccaatatcacttc 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 atgaaggtgaatccccagggactgattgagccgcgccaatatcacttc 112
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatcactt 107
||||||||||||||||||||||||||
Sbjct: 68 ctgattgagccgcgccaatatcactt 93
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcacttc 108
|||||||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatcacttc 96
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcactt 107
||||||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatcactt 88
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcactt 107
||||||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatcactt 95
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcactt 107
||||||||||||||||||||||||
Sbjct: 74 gattgagccgcgccaatatcactt 97
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatcac 105
||||||||||||||||||||||||
Sbjct: 69 ctgattgagccgcgccaatatcac 92
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcactt 107
||||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcactt 93
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 gagcgatattggtgaggttcaatc 26
||||||||||||||||||||||||
Sbjct: 7 gagcgatattggtgaggttcaatc 30
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatcacttc 108
|||||||||||||||||||||| ||||
Sbjct: 67 ctgattgagccgcgccaatatctcttc 93
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatcac 105
|||||||||||||||||||||||
Sbjct: 69 tgattgagccgcgccaatatcac 91
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatc 103
||||||||||||||||||||||
Sbjct: 76 ctgattgagccgcgccaatatc 97
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatc 103
||||||||||||||||||||||
Sbjct: 81 ctgattgagccgcgccaatatc 102
>RF00643;MIR171_1;ABEU01001861.1/185639-185542 145481:Physcomitrella
patens subsp. patens
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcac 105
||||||||||||||||||||||
Sbjct: 67 gattgagccgcgccaatatcac 88
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcac 105
||||||||||||||||||||||
Sbjct: 66 gattgagccgcgccaatatcac 87
