miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;ABXC01001499.1/165004-165103 4558:Sorghum bicolor
(sorghum)
Length = 100
Score = 198 bits (100), Expect = 1e-50
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 6 catactgagagttccttggcattctgtccacctccttgcccatcgtcagatatatgtgtt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catactgagagttccttggcattctgtccacctccttgcccatcgtcagatatatgtgtt 60
Query: 66 gcttttggaggtggacatactgccaatggagctgtgtagg 105
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcttttggaggtggacatactgccaatggagctgtgtagg 100
>RF00688;MIR394;ABXC01002939.1/43674-43574 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 69.9 bits (35), Expect = 7e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 8 tactgagagttccttggcattctgtccacctccttgcccatcg 50
|||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 3 tactgaaagttccttggcattctgtccacctccttgccgatcg 45
>RF00688;MIR394;BT066604.1/356-467 4577:Zea mays
Length = 112
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 8 tactgagagttccttggcattctgtccacctcc 40
|||||||||||||||||||||||||||||||||
Sbjct: 3 tactgagagttccttggcattctgtccacctcc 35
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 69 tttggaggtggacatactgccaatggagctgtgtagg 105
||||||||||| ||||||||||||||||||| |||||
Sbjct: 76 tttggaggtgggcatactgccaatggagctgcgtagg 112
>RF00688;MIR394;AACV01005112.1/32080-32191 39947:Oryza sativa
Japonica Group
Length = 112
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 57 atatgtgttgcttttggaggtggacatactgccaatggagctgtgtagg 105
|||| ||||| | |||||||||| |||||||||||||||||||||||||
Sbjct: 64 atatctgttgatcttggaggtgggcatactgccaatggagctgtgtagg 112
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 8 tactgagagttccttggcattctgtccacctccttg 43
|||||||||||| |||||||||||||||||||||||
Sbjct: 3 tactgagagttctttggcattctgtccacctccttg 38
>RF00688;MIR394;EU947221.1/92-210 4577:Zea mays
Length = 119
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 68 ttttggaggtggacatactgccaatggagctgtg 101
|||||||||||| |||||||||||||||||||||
Sbjct: 82 ttttggaggtgggcatactgccaatggagctgtg 115
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 agagttccttggcattctgtccacctcct 41
|||||||||||||||||||||||||||||
Sbjct: 9 agagttccttggcattctgtccacctcct 37
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 agagttccttggcattctgtccacctcctt 42
||||||| ||||||||||||||||||||||
Sbjct: 6 agagttctttggcattctgtccacctcctt 35
>RF00688;MIR394;EU549378.1/213-333 3702:Arabidopsis thaliana
(thale cress)
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcctt 42
||||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcctt 35
>RF00688;MIR394;EU549400.1/212-328 3702:Arabidopsis thaliana
(thale cress)
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcctt 42
||||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcctt 35
>RF00688;MIR394;AASG02000377.1/56114-56246 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcctt 42
||||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcctt 35
