miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
           (sorghum)
          Length = 110

 Score =  218 bits (110), Expect = 1e-56
 Identities = 110/110 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  ctttgtgatcttccacagctttcttgaactgcatctctaagaggagcagcttgaactctc 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctttgtgatcttccacagctttcttgaactgcatctctaagaggagcagcttgaactctc 60

                                                             
Query: 71  tacctgcatgagcaggtgcagttcaataaagctgtgggaaactgcagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tacctgcatgagcaggtgcagttcaataaagctgtgggaaactgcagaga 110




>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
          Length = 119

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 88  gcagttcaataaagctgtgggaaactgcagaga 120
           |||||||||||||||||||||||||||||||||
Sbjct: 87  gcagttcaataaagctgtgggaaactgcagaga 119



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 19 tcttccacagctttcttgaactgcat 44
          ||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcat 34




>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa
          Japonica Group
          Length = 155

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 11 ctttgtgatcttccacagctttcttgaactgca 43
          |||||||||||||||||||||||||||||||||
Sbjct: 1  ctttgtgatcttccacagctttcttgaactgca 33



 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 88  gcagttcaataaagctgtgggaaactgcagaga 120
           |||||||||||||||||||||||| ||||||||
Sbjct: 123 gcagttcaataaagctgtgggaaattgcagaga 155




>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
          Indica Group
          Length = 117

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 11 ctttgtgatcttccacagctttcttgaactgcatct 46
          ||||||| ||||||||||||||||||||||||||||
Sbjct: 1  ctttgtggtcttccacagctttcttgaactgcatct 36



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 86  gtgcagttcaataaagctgtgggaaactgcagaga 120
           |||||||||||||||||||||||||| | ||||||
Sbjct: 83  gtgcagttcaataaagctgtgggaaattacagaga 117




>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
           (sorghum)
          Length = 107

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 88  gcagttcaataaagctgtgggaaactgcagaga 120
           |||||||||||||||||||||||| ||||||||
Sbjct: 75  gcagttcaataaagctgtgggaaattgcagaga 107



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 19 tcttccacagctttcttgaactgcat 44
          ||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcat 34




>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
          (castor bean)
          Length = 166

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 19 tcttccacagctttcttgaactgcatct 46
          ||||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcatct 36




>RF00648;MIR396;CAAP02002594.1/43203-43097 29760:Vitis vinifera
          Length = 107

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 14 tgtgatcttccacagctttcttgaactg 41
          ||||||||||||||||||||||||||||
Sbjct: 4  tgtgatcttccacagctttcttgaactg 31




>RF00648;MIR396;ABIM01023164.1/6366-6248 3649:Carica papaya
          (papaya)
          Length = 119

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 11 ctttgtgatcttccacagctttcttgaactg 41
          ||||||| |||||||||||||||||||||||
Sbjct: 1  ctttgtggtcttccacagctttcttgaactg 31




>RF00648;MIR396;AASG02002614.1/17574-17698 3988:Ricinus communis
          (castor bean)
          Length = 125

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 15 gtgatcttccacagctttcttgaactg 41
          |||||||||||||||||||||||||||
Sbjct: 5  gtgatcttccacagctttcttgaactg 31




>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
          (barrel medic)
          Length = 106

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 19 tcttccacagctttcttgaactgcatc 45
          |||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcatc 35




>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
          Length = 100

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 19 tcttccacagctttcttgaactgcatc 45
          |||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcatc 35




>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
          (papaya)
          Length = 101

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 19 tcttccacagctttcttgaactgcat 44
          ||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcat 34




>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
          Length = 119

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 19 tcttccacagctttcttgaactgcat 44
          ||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcat 34




>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
          (thale cress)
          Length = 152

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 tcttccacagctttcttgaactgca 43
          |||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33




>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus
          trichocarpa
          Length = 126

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 tcttccacagctttcttgaactgca 43
          |||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33




>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
          trichocarpa
          Length = 135

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 tcttccacagctttcttgaactgca 43
          |||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33