miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;ABXC01002982.1/36897-37040 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 73.8 bits (37), Expect = 7e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 118 caaagaaggtcaagaaagctgtgggaagaaatgacat 154
|||||||||||||||||||||||||||||||||||||
Sbjct: 108 caaagaaggtcaagaaagctgtgggaagaaatgacat 144
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 tgccatgcctttccacagctttcttgaact 40
||||||||||||||||||||||||||||||
Sbjct: 1 tgccatgcctttccacagctttcttgaact 30
>RF00648;MIR396;AP008208.1/34306506-34306365 39947:Oryza sativa
Japonica Group
Length = 142
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 tgccatgcctttccacagctttcttgaact 40
||||||||||||||||||||||||||||||
Sbjct: 1 tgccatgcctttccacagctttcttgaact 30
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 120 aagaaggtcaagaaagctgtgggaagaaatg 150
|||| ||||||||||||||||||||||||||
Sbjct: 108 aagagggtcaagaaagctgtgggaagaaatg 138
>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 tgccatgcctttccacagctttcttgaact 40
|||||||| |||||||||||||||||||||
Sbjct: 1 tgccatgcttttccacagctttcttgaact 30
>RF00648;MIR396;AACV01005603.1/23634-23775 39947:Oryza sativa
Japonica Group
Length = 142
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 tgccatgcctttccacagctttcttgaac 39
|||||||||||||||||||| ||||||||
Sbjct: 1 tgccatgcctttccacagctctcttgaac 29
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 catgcctttccacagctttcttgaact 40
||||| |||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
trichocarpa
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 catgcctttccacagctttcttgaact 40
||||| |||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 catgcctttccacagctttcttgaact 40
||||| |||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 catgcctttccacagctttcttgaact 40
||||| |||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 catgcctttccacagctttcttgaact 40
||||| |||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 catgcctttccacagctttcttgaact 40
||||| |||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 11 tgccatgcctttccacagctttcttgaact 40
||||||| |||||||||||||||||||||
Sbjct: 104 tgccatgtttttccacagctttcttgaact 75
