miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;ABXC01004473.1/64146-64350 4558:Sorghum bicolor
(sorghum)
Length = 205
Score = 375 bits (189), Expect = e-103
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaactgtgaactcgtgggggtagaaaccttgctgggtttggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tttccacaggctttcttgaactgtgaactcgtgggggtagaaaccttgctgggtttggtt 68
Query: 61 cccatgtcggatggaatgcttggctcctcccagcgattcttccccggccgtgagtgaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 cccatgtcggatggaatgcttggctcctcccagcgattcttccccggccgtgagtgaatt 128
Query: 121 gaattgcggggtttctcgcttcgctcggccggctctacctgttgatggttcaagaaagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gaattgcggggtttctcgcttcgctcggccggctctacctgttgatggttcaagaaagcc 188
Query: 181 catggaaac 189
|||||||||
Sbjct: 189 catggaaac 197
>RF00648;MIR396;AL732351.2/3841-4022 4530:Oryza sativa (rice)
Length = 182
Score = 75.8 bits (38), Expect = 2e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaactgtgaactcgtgggggt 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tttccacaggctttcttgaactgtgaactcgtgggggt 46
Score = 73.8 bits (37), Expect = 8e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 153 ctctacctgttgatggttcaagaaagcccatggaaac 189
|||||||||||||||||||||||||||||||||||||
Sbjct: 138 ctctacctgttgatggttcaagaaagcccatggaaac 174
>RF00648;MIR396;EU950590.1/116-359 4577:Zea mays
Length = 244
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaactgtgaactcgtggg 35
|||||||||||||||||||||||||||||||||||
Sbjct: 9 tttccacaggctttcttgaactgtgaactcgtggg 43
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 157 acctgttgatggttcaagaaagcccatggaaac 189
|||||||||||||||||||||||||||||||||
Sbjct: 204 acctgttgatggttcaagaaagcccatggaaac 236
>RF00648;MIR396;AP004043.3/15829-15652 39947:Oryza sativa Japonica
Group
Length = 178
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 tccacaggctttcttgaactgtgaactcgtg 33
|||||||||||||||||||||||||||||||
Sbjct: 11 tccacaggctttcttgaactgtgaactcgtg 41
>RF00648;MIR396;ABXC01003010.1/105635-105521 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 tccacaggctttcttgaactgtgaactcg 31
|||||||||||||||||||||||||||||
Sbjct: 11 tccacaggctttcttgaactgtgaactcg 39
>RF00648;MIR396;AC226038.1/95545-95657 4641:Musa acuminata
Length = 113
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 3 tccacaggctttcttgaactgtgaact 29
|||||||||||||||||||||||||||
Sbjct: 11 tccacaggctttcttgaactgtgaact 37
