miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
(barrel medic)
Length = 97
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 78 caactcatgtgttctcaggtcgcccccgctg 108
|||||||||||||||||||||||||| ||||
Sbjct: 60 caactcatgtgttctcaggtcgcccctgctg 90
>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
Length = 90
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 81 ctcatgtgttctcaggtcgcccccgctgga 110
||||||||||||||||||||||| ||||||
Sbjct: 56 ctcatgtgttctcaggtcgcccctgctgga 85
>RF00695;MIR398;ABXC01000980.1/272433-272305 4558:Sorghum bicolor
(sorghum)
Length = 129
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 catgtgttctcaggtcgcccccgc 106
||||||||||||||||||||||||
Sbjct: 97 catgtgttctcaggtcgcccccgc 120
>RF00695;MIR398;EU940707.1/90-217 4577:Zea mays
Length = 128
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 83 catgtgttctcaggtcgcccccg 105
|||||||||||||||||||||||
Sbjct: 96 catgtgttctcaggtcgcccccg 118
>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
trichocarpa
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tcatgtgttctcaggtcgcccc 103
||||||||||||||||||||||
Sbjct: 53 tcatgtgttctcaggtcgcccc 74
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tcatgtgttctcaggtcgcccc 103
||||||||||||||||||||||
Sbjct: 105 tcatgtgttctcaggtcgcccc 126
