miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 254 bits (128), Expect = 9e-67
Identities = 161/172 (93%)
Strand = Plus / Plus
Query: 13 gcatgtggcggcaccgagcatgaggcaacaactgcattacttgcggggaaggcgcaagta 72
||||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||
Sbjct: 2 gcatgtggcggcaccaagcatgaggcaacaactgcagtacttgtggggaaggcacaagta 61
Query: 73 ggacacctgcattacttgcaaacaaggcgcaaaattaatagaagatcaccatacttgtgg 132
||||||| |||||| ||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct: 62 ggacaccaacattacctgcaagcaagacgcaaaattaatagaacatcaccatacttgtgg 121
Query: 133 ctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctccctttgcc 184
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 122 ctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccctttgcc 173
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 101 bits (51), Expect = 8e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 122 catacttgtggctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcccttt 181
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 105 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcccttt 164
Query: 182 gcc 184
|||
Sbjct: 165 gcc 167
Score = 46.1 bits (23), Expect = 4e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 124 tacttgtggctttcttgcaagtcatgcagtt 154
|||||||| ||||||||||||| ||||||||
Sbjct: 61 tacttgtgactttcttgcaagtaatgcagtt 31
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 81.8 bits (41), Expect = 7e-15
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 122 catacttgtggctttcttgcaagtcatgcagttgctgcctcaagcttgctgcc 174
|||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 177 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
Score = 58.0 bits (29), Expect = 1e-07
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 126 cttgtggctttcttgcaagtcatgcagttgctgcctcaagcttgctgcc 174
|||||| ||||||||||||| |||||||| |||||||| ||||| ||||
Sbjct: 49 cttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 1
Score = 46.1 bits (23), Expect = 4e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 22 ggcaccgagcatgaggcaacaactgcattacttgc 56
|||||| ||||||||||| |||||||||||||||
Sbjct: 1 ggcaccaagcatgaggcaggaactgcattacttgc 35
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 81.8 bits (41), Expect = 7e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 140 gcaagtcatgcagttgctgcctcaagcttgctgcctccctttgcc 184
|||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 134
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 81.8 bits (41), Expect = 7e-15
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 136 tcttgcaagtcatgcagttgctgcctcaagcttgctgcctccctttgcc 184
|||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccctttgcc 129
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 77.8 bits (39), Expect = 1e-13
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 135 ttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 177
||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 69.9 bits (35), Expect = 3e-11
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 134 tttcttgcaagtcatgcagttgctgcctcaagcttgctgcctccctttgcc 184
|||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 69.9 bits (35), Expect = 3e-11
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 134 tttcttgcaagtcatgcagttgctgcctcaagcttgctgcctccctttgcc 184
|||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 130
Score = 58.0 bits (29), Expect = 1e-07
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 134 tttcttgcaagtcatgcagttgctgcctcaagcttgctgcc 174
||||||||||| |||||||||||||||| |||||||||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 65.9 bits (33), Expect = 4e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 133 ctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 177
||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 50.1 bits (25), Expect = 3e-05
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 12 tgcatgtggcggcaccgagcatgaggcaacaactgcattacttgc 56
||||| ||| |||||| ||||||||| |||||||||||||||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggttacaactgcattacttgc 45
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 61.9 bits (31), Expect = 7e-09
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 124 tacttgtggctttcttgcaagtcatgcagttgctgcctcaagcttgctgcc 174
|||||||| ||||||||||||| |||||||| |||||||| ||||| ||||
Sbjct: 61 tacttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 11
Score = 50.1 bits (25), Expect = 3e-05
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 12 tgcatgtggcggcaccgagcatgaggcaacaactgcattacttgc 56
||||| ||| |||||| ||||||||||| |||||||||||||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggcaggaactgcattacttgc 45
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 61.9 bits (31), Expect = 7e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 134 tttcttgcaagtcatgcagttgctgcctcaagcttgctgcctccctttgcc 184
||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
Score = 48.1 bits (24), Expect = 1e-04
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 134 tttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 177
||||||||||| |||||||||||| ||| ||||||| ||||||
Sbjct: 51 tttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
