miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 145 bits (73), Expect = 2e-34
Identities = 139/165 (84%), Gaps = 17/165 (10%)
Strand = Plus / Plus
Query: 6 gcatgtggcggcaccgagcatgaggcaacaactgcattacttgcggggaaggcgcaagta 65
||||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||
Sbjct: 2 gcatgtggcggcaccaagcatgaggcaacaactgcagtacttgtggggaaggcacaagta 61
Query: 66 ggacacctgcattacttgcaaacaaggcgca-----------------ccatacttgtgg 108
||||||| |||||| ||||| |||| |||| ||||||||||||
Sbjct: 62 ggacaccaacattacctgcaagcaagacgcaaaattaatagaacatcaccatacttgtgg 121
Query: 109 ctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 166
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 95.6 bits (48), Expect = 2e-19
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 98 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 105 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 160
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 89.7 bits (45), Expect = 1e-17
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 98 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcc 150
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 177 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
Score = 50.1 bits (25), Expect = 9e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 102 cttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcc 150
|||||| ||||||||||||| ||||||| |||||||| ||||| ||||
Sbjct: 49 cttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 1
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 15 ggcaccgagcatgaggcaacaactgcattacttgc 49
|||||| ||||||||||| |||||||||||||||
Sbjct: 1 ggcaccaagcatgaggcaggaactgcattacttgc 35
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 73.8 bits (37), Expect = 7e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 109 ctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 50.1 bits (25), Expect = 9e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 5 tgcatgtggcggcaccgagcatgaggcaacaactgcattacttgc 49
||||| ||| |||||| ||||||||| |||||||||||||||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggttacaactgcattacttgc 45
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 69.9 bits (35), Expect = 1e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 111 ttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 63.9 bits (32), Expect = 6e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 110 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
|||||||||||| ||||||||| || ||||||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 63.9 bits (32), Expect = 6e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 110 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
|||||||||||| ||||||||| || ||||||||||||||||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 123
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 110 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccac 155
||||||||||| ||||||||||||||| ||||||||||| ||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctgccgccac 6
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 124 tgcagttgctgcctcaagcttgctgcctcc 153
||||||||||||||||||||||||||||||
Sbjct: 98 tgcagttgctgcctcaagcttgctgcctcc 127
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 60.0 bits (30), Expect = 1e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 112 tcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
|||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctcc 122
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 110 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
||||||||||| ||||||||| || ||||||||||||||||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctcc 121
Score = 44.1 bits (22), Expect = 6e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 110 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccac 155
||||||||||| ||||||||||| ||| ||||||| ||||||||
Sbjct: 51 tttcttgcaagatatgcagttgctgtctctagcttgccgcctccac 6
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 54.0 bits (27), Expect = 6e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 100 tacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcc 150
|||||||| ||||||||||||| ||||||| |||||||| ||||| ||||
Sbjct: 61 tacttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 11
Score = 50.1 bits (25), Expect = 9e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 5 tgcatgtggcggcaccgagcatgaggcaacaactgcattacttgc 49
||||| ||| |||||| ||||||||||| |||||||||||||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggcaggaactgcattacttgc 45
