miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 121 bits (61), Expect = 2e-27
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
|||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgct 64
Query: 69 cttatatttctttacggaggg 89
||||||||||||||| |||||
Sbjct: 65 cttatatttctttacagaggg 85
Score = 89.7 bits (45), Expect = 6e-18
Identities = 72/81 (88%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgctctta 72
|||||||||||||||||| |||| |||||||||||| |||||||||||||||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 73 tatttctttacggagggagta 93
||||||||||| |||| ||||
Sbjct: 25 tatttctttacagaggtagta 5
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 117 bits (59), Expect = 3e-26
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 7 tgtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacg 66
|||||||| ||||||||||||||| |||| || ||||||||| ||||||| ||||||||
Sbjct: 3 tgtactccttctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaaca 62
Query: 67 ctcttatatttctttacggagggagta 93
|||||||||||||||||||||||||||
Sbjct: 63 ctcttatatttctttacggagggagta 89
Score = 91.7 bits (46), Expect = 2e-18
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||| |||||||||||| ||||||||||||| ||| |||||||||| |||||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgct 30
Query: 69 cttatatttctttacggagggagtac 94
||||||||||||||| || |||||||
Sbjct: 29 cttatatttctttacagaaggagtac 4
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 105 bits (53), Expect = 1e-22
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
|||||||||||||||| |||||| || | ||||||||| || || |||||||||||||||
Sbjct: 4 gtactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgc 63
Query: 68 tcttatatttctttacggagggagtactg 96
|||||||||||||||| |||||| |||||
Sbjct: 64 tcttatatttctttactgagggactactg 92
Score = 79.8 bits (40), Expect = 6e-15
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 12 tccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgctctt 71
|||||| |||||||||||| |||| |||||||||||| ||| ||||||||||| |||
Sbjct: 86 tccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaacgccctt 27
Query: 72 atatttctttacggagggagtact 95
|||||| ||||| |||||||||||
Sbjct: 26 atatttgtttacagagggagtact 3
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 6 atgtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaac 65
||||||||||||| |||| ||||| ||||||||||||||||| || ||||| |||||||
Sbjct: 2 atgtactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaac 61
Query: 66 gctcttatatttctttacggagggagta 93
||||||||||| |||||||||||||||
Sbjct: 62 gctcttatattagtttacggagggagta 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||| ||||| ||||| |||| ||||||| |||| ||||||||||||| ||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacact 30
Query: 69 cttatatttctttacggagggagtac 94
|||||||| |||| ||||||||||
Sbjct: 29 cttatattggtttatagagggagtac 4
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 6 atgtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaac 65
|||||||||||| ||| |||||||| ||| ||||||||||||| ||||||| |||||||
Sbjct: 2 atgtactccctccgtacagaaatataagaatgtttagatcactaaagtagttatctaaat 61
Query: 66 gctcttatatttctttacggagggagta 93
| |||||||||||||||| |||||||||
Sbjct: 62 gatcttatatttctttacagagggagta 89
Score = 75.8 bits (38), Expect = 9e-14
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
|||||||||||||||||||||| ||| ||||||| ||| ||||||||||||| |
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataactactttagtgatctaaacatt 30
Query: 69 cttatatttctttacggagggagtac 94
||||||||||| ||||||||||||||
Sbjct: 29 cttatatttctgtacggagggagtac 4
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 103 bits (52), Expect = 4e-22
Identities = 78/87 (89%), Gaps = 6/87 (6%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
|||||||||||||||||||||| |||| |||||||||| ||||||||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagatca------tagtgatctaaacgct 58
Query: 69 cttatatttctttacggagggagtact 95
||||||||||||||| |||||||||||
Sbjct: 59 cttatatttctttacagagggagtact 85
Score = 93.7 bits (47), Expect = 4e-19
Identities = 76/86 (88%), Gaps = 6/86 (6%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
||||||||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct: 84 gtactccctctgtaaagaaatataagagcgtttagatcacta------tgatctaaacgc 31
Query: 68 tcttatatttctttacggagggagta 93
|||||||||||||||| |||||||||
Sbjct: 30 tcttatatttctttacagagggagta 5
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 101 bits (51), Expect = 2e-21
Identities = 69/75 (92%)
Strand = Plus / Minus
Query: 19 gtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgctcttatatttc 78
||||| |||||| |||| ||| |||||||| ||||||||| |||||||||||||||||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttc 20
Query: 79 tttacggagggagta 93
|||||||||||||||
Sbjct: 19 tttacggagggagta 5
Score = 61.9 bits (31), Expect = 1e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||| |||||||||||| |||| |||||| ||||| |||||||| ||||||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttaggtcactacttgagtgatctgaacgct 64
Query: 69 cttatatttctttac 83
||||||||| |||||
Sbjct: 65 cttatatttgtttac 79
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 101 bits (51), Expect = 2e-21
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
|||||||||| |||||||||||| |||| ||||||| |||| ||||||| ||||||| ||
Sbjct: 4 gtactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatgc 63
Query: 68 tcttatatttctttacggagggagtac 94
||||||||||||||| ||||||||||
Sbjct: 64 tcttatatttctttatagagggagtac 90
Score = 93.7 bits (47), Expect = 4e-19
Identities = 80/91 (87%)
Strand = Plus / Minus
Query: 5 tatgtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaa 64
|||||||||||||| ||||||||||| |||| ||||||| ||| ||||| ||||||
Sbjct: 93 tatgtactccctctataaagaaatataagagcatttagataactactttagtgctctaaa 34
Query: 65 cgctcttatatttctttacggagggagtact 95
||||||||||||||||||| |||||||||||
Sbjct: 33 cgctcttatatttctttaccgagggagtact 3
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 97.6 bits (49), Expect = 3e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 34 agtgtttagatcacttaagtagtgatctaaacgctcttatatttctttacggagggagta 93
||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 28 agtgtttagatcactaaagtagtgatctaaacactcttatatttctttacagagggagta 87
Query: 94 c 94
|
Sbjct: 88 c 88
Score = 93.7 bits (47), Expect = 4e-19
Identities = 80/90 (88%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
Sbjct: 88 gtactccctctgtaaagaaatataagagtgtttagatcactactttagtgatctaaa--c 31
Query: 68 tcttatatttctttacggagggagtactgt 97
|||| |||| |||||||||||||||||||
Sbjct: 30 acttacatttatttacggagggagtactgt 1
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||||||||| ||||| |||| |||||||||||| |||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 69 cttatatt 76
||||||||
Sbjct: 65 cttatatt 72
Score = 63.9 bits (32), Expect = 4e-10
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 26 aatattagagtgtttagatcacttaagtagtgatctaaacgctcttatatttctttacgg 85
||||| |||| |||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct: 72 aatataagagcgtttagatcactactttagtgatctaaacgctcttatattagtttacag 13
Query: 86 agggagta 93
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 93.7 bits (47), Expect = 4e-19
Identities = 59/63 (93%)
Strand = Plus / Minus
Query: 21 aaagaaatattagagtgtttagatcacttaagtagtgatctaaacgctcttatatttctt 80
|||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 77 aaagaaatataagagtgtctagatcactaaagtagtgatctaaacgctcttatatttgtt 18
Query: 81 tac 83
|||
Sbjct: 17 tac 15
Score = 69.9 bits (35), Expect = 6e-12
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 15 ctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgctcttata 74
||||||||| |||||| |||| |||||||||||| |||||||||| || ||||||||
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcactactttagtgatctagacactcttata 70
Query: 75 tttctttacggagggagta 93
||||||| ||||| |||||
Sbjct: 71 tttctttgcggagtgagta 89
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||||||||| ||||| |||| | |||||||||| |||||||||||||| ||||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgct 30
Query: 69 cttatatttctttacggagggagta 93
|||||||| ||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 65.9 bits (33), Expect = 9e-11
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||||||||| ||||| |||| | |||||||||| ||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 69 cttatatttctttacggagggagta 93
|||||||| ||||| |||||||||
Sbjct: 65 cttatattagtttacagagggagta 89
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||| |||||||||||| |||| ||||||||||| |||||||||||| || |||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 69 cttatatttctttacggagggagta 93
|||||||| ||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||||||||| ||||| |||| || |||||||| |||||||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 69 cttatatttctttacggagggagta 93
|||||||||||||||||||||||||
Sbjct: 65 cttatatttctttacggagggagta 89
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||||||||| ||||| |||| ||||||||||| || |||| |||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 69 cttatatttctttacggagggagta 93
|||||||| |||||||||||||||
Sbjct: 65 cttatattagtttacggagggagta 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||| ||||| ||||| |||| |||||||| ||| |||||||||||| |||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 69 cttatatttctttacggagggagta 93
|||||||| ||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
|||||| |||||||| | ||| |||| |||||||||||| ||||||| |||||||||||
Sbjct: 89 tactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgct 30
Query: 69 cttatatttctttacggagggagta 93
|||||||| |||||||||||||||
Sbjct: 29 cttatattaatttacggagggagta 5
Score = 52.0 bits (26), Expect = 1e-06
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||| ||||| ||||| |||| |||||||| ||| ||||||||||||||||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgct 64
Query: 69 cttata 74
||||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||||||||| ||||| |||| |||| ||||||| || ||||||||||||||||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgct 64
Query: 69 cttatatttctttacggagg 88
|||||||| ||||||||||
Sbjct: 65 cttatattagtttacggagg 84
Score = 56.0 bits (28), Expect = 9e-08
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 26 aatattagagtgtttagatcacttaagtagtgatctaaacgctcttatatttctttacgg 85
||||| |||| |||||||||||| |||||||| ||||||||||||||| ||||| |
Sbjct: 72 aatataagagcgtttagatcactattttagtgatccaaacgctcttatattaatttacag 13
Query: 86 agggagta 93
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/85 (87%)
Strand = Plus / Minus
Query: 10 actccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgctc 69
|||||||| ||||| ||||| |||| |||||||||||| || |||||||| |||| |||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 29
Query: 70 ttatatttctttacggagggagtac 94
||||||| ||||||||||||||||
Sbjct: 28 ttatattaatttacggagggagtac 4
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
|||||||||| ||||| ||||| ||||||||| ||||||| |||||||||||||||
Sbjct: 4 gtactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgc 63
Query: 68 tcttatatttctttacggagggagt 92
||||||||| ||||| ||||||||
Sbjct: 64 tcttatattagtttactgagggagt 88
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 81.8 bits (41), Expect = 2e-15
Identities = 77/88 (87%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
|||||||||||||||| ||||| ||||||||||||| ||| || |||| |||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttagataactaaaatagt--tctaaacgc 61
Query: 68 tcttatatttctttacggagggagtact 95
| ||||||| |||||||||||||||||
Sbjct: 62 tattatattagtttacggagggagtact 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacgctcttatatttctttacggagggagtact 95
|||| |||||||| |||||||||| ||||| |||||||||||
Sbjct: 45 tagttatctaaacactcttatattagtttacagagggagtact 3
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 81.8 bits (41), Expect = 2e-15
Identities = 77/88 (87%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
|||||||||||||||| ||||| | ||||||||||| ||| || |||| |||||||||
Sbjct: 4 gtactccctctgtaaactaatataaaagtgtttagataactaaaatagt--tctaaacgc 61
Query: 68 tcttatatttctttacggagggagtact 95
||||||||| |||||||||||||||||
Sbjct: 62 tcttatattagtttacggagggagtact 89
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 7 tgtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacg 66
||||||||||||||||| ||||| | | ||||||||||| ||||||| ||||||||
Sbjct: 91 tgtactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaaca 32
Query: 67 ctcttatatttctttacggagggagta 93
|||||||||| |||||||||||||||
Sbjct: 31 ctcttatattagtttacggagggagta 5
Score = 52.0 bits (26), Expect = 1e-06
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||| ||||| ||||| ||||||||||||| ||| |||||||||||| | |
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtt 64
Query: 69 cttatatttctttacggagggagtac 94
||||||| ||||| ||||||||||
Sbjct: 65 tttatattagtttacagagggagtac 90
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||| ||||| ||||| |||| ||||||| ||| || ||||||||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgct 30
Query: 69 cttatatttctttacggagggagtact 95
|||||||| ||||| |||||||||||
Sbjct: 29 cttatattagtttacagagggagtact 3
Score = 75.8 bits (38), Expect = 9e-14
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
|||||||||||||||| ||||| |||| |||||||||||| |||| |||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgc 63
Query: 68 tcttatatttctttacggagggagta 93
||||||||| |||||||||||||||
Sbjct: 64 tcttatattagtttacggagggagta 89
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 5 tatgtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaa 64
||||||||||||||||||| ||||| ||||| ||||||| ||| || ||||| ||||||
Sbjct: 1 tatgtactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaa 60
Query: 65 cgctcttatatttctttacggaggga 90
||||||||||| |||||| |||||
Sbjct: 61 tgctcttatattagtttacgaaggga 86
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 71.9 bits (36), Expect = 1e-12
Identities = 77/91 (84%), Gaps = 6/91 (6%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcactta------agtagtgatcta 62
|||||||||||||||||||||| ||| |||||||||||| | ||||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcactaaaatagtagtagtgatcta 64
Query: 63 aacgctcttatatttctttacggagggagta 93
|| | |||||||||||||| ||||||||||
Sbjct: 65 aatgatcttatatttctttgtggagggagta 95
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacgctcttatatttctttacggagggagta 93
|||||||||||||| |||||||||||||||| |||||||||
Sbjct: 45 tagtgatctaaacgatcttatatttctttacagagggagta 5
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 71.9 bits (36), Expect = 1e-12
Identities = 52/56 (92%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 38 tttagatcacttaagtagtgatctaaacgctcttatatttctttacggagggagta 93
||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 33 tttagatcact-aagtagtgatctaaatgctcttatattagtttacggagggagta 87
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 12 tccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgctctt 71
|||||||||||| ||||| ||| ||||||||||| ||||||||||||||| | ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 72 atatttctttacggagggagtac 94
||||| ||||| ||||||||||
Sbjct: 68 atattagtttacagagggagtac 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 7 tgtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacg 66
||||||||||||||||| ||||| ||| ||||||||||| |||||||||||| |
Sbjct: 91 tgtactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaag 32
Query: 67 ctcttatatttctttacggagggagtact 95
||||||||| ||||| |||||| ||||
Sbjct: 31 gtcttatattagtttacagagggaatact 3
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
|||| |||||||||| ||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 69 cttatatttctttacggagggagtact 95
|||||||| |||||||||||||||||
Sbjct: 29 cttatattagtttacggagggagtact 3
Score = 67.9 bits (34), Expect = 2e-11
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
|||||||||| ||||| ||||| |||| |||||| ||||| || |||||||||||| ||
Sbjct: 4 gtactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgc 63
Query: 68 tcttatatttctttacggagggagta 93
||||||||| ||||| |||| ||||
Sbjct: 64 tcttatattagtttacagaggaagta 89
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 69.9 bits (35), Expect = 6e-12
Identities = 70/81 (86%), Gaps = 3/81 (3%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaa---gtagtgatctaaac 65
|||||| || ||||||||||| |||| || ||||||||| || ||||||||||||||
Sbjct: 92 tactccatccgtaaagaaatacaagagcgtctagatcactaaaatagtagtgatctaaac 33
Query: 66 gctcttatatttctttacgga 86
| |||||||||||||||||||
Sbjct: 32 gttcttatatttctttacgga 12
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 53 tagtgatctaaacgctcttatatttctttacggagggagta 93
|||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 52 tagtgatctagacgctcttgtatttctttacggatggagta 92
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||||||||| ||||| | ||| |||| || ||| || ||||||||||||| ||
Sbjct: 89 tactccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacact 30
Query: 69 cttatatttctttacggagggagtact 95
|||||||| ||||| |||||||||||
Sbjct: 29 cttatattagtttacagagggagtact 3
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcact 48
|||||||||||||||| ||||| |||||||||||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttagatcact 44
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||||||||| ||||| |||| |||||||| ||| |||||||| |||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgct 64
Query: 69 cttatatttctttacggagggagtact 95
||||||| ||||| | |||||||||
Sbjct: 65 tttatattagtttacagggggagtact 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacgctcttatatttctttacggagggagta 93
|||| ||||||||||||||||||| ||||| |||||||||
Sbjct: 45 tagtaatctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 69.9 bits (35), Expect = 6e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 37 gtttagatcacttaagtagtgatctaaacgctcttatatttctttacggagggagtact 95
|||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 33 gtttagatca-ttaagtagtgatctaaatgctcttatattagtttacagagggagtact 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 72/86 (83%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
|||||||||||||||| ||||| |||| |||||||||| || || ||||||||||||
Sbjct: 89 gtactccctctgtaaactaatataagagcatttagatcac-tacttaatgatctaaacgc 31
Query: 68 tcttatatttctttacggagggagta 93
| ||||||| |||| | ||||||||
Sbjct: 30 ttttatattagtttatgaagggagta 5
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 65.9 bits (33), Expect = 9e-11
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||| ||||| ||||| |||| |||| |||| | || ||||||||||||| ||
Sbjct: 89 tactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacact 30
Query: 69 cttatatttctttacggagggagta 93
|||||||| |||||||||||||||
Sbjct: 29 cttatattagtttacggagggagta 5
Score = 58.0 bits (29), Expect = 2e-08
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||| ||||| ||||| ||||||||||||||||| || |||| |||| |||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgct 64
Query: 69 cttatatttctttacggagggagta 93
|||||||| ||||| |||||||||
Sbjct: 65 cttatattagtttaccgagggagta 89
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 65.9 bits (33), Expect = 9e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaa 64
|||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacgctcttatatttctttacggagggagtact 95
|||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 45 tagtgatctaaaagctcttatattagtttacagagggagtact 3
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 63.9 bits (32), Expect = 4e-10
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||| ||||| ||||| |||| ||||||||| | || ||||||||||||||||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 69 cttatatt 76
||||||||
Sbjct: 74 cttatatt 67
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 27 atattagagtgtttagatcacttaagtagtgatctaaacgctcttatatttctttacgga 86
||||||| |||||||||||| | || | ||| ||||||||||||||||| ||||| ||
Sbjct: 71 atattagtgtgtttagatcattaaaattatgacctaaacgctcttatattagtttacaga 12
Query: 87 gggagtact 95
|||||||||
Sbjct: 11 gggagtact 3
Score = 56.0 bits (28), Expect = 9e-08
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 26 aatattagagtgtttagatcacttaagtagtgatctaaacgctcttatatttctttacgg 85
||||| |||| |||||||||||| || ||||||||| ||||||||||| |||||||
Sbjct: 67 aatataagagcgtttagatcactattttaatgatctaaatgctcttatattagtttacgg 126
Query: 86 agggagta 93
||||||||
Sbjct: 127 agggagta 134
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 60.0 bits (30), Expect = 6e-09
Identities = 74/88 (84%), Gaps = 3/88 (3%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcact---taagtagtgatctaaac 65
|||||||| |||||| ||||| |||| |||||||||||| |||||||||||||||
Sbjct: 92 tactccctatgtaaaataatataagagcgtttagatcactagagtagtagtgatctaaac 33
Query: 66 gctcttatatttctttacggagggagta 93
||||| |||||| || || |||||||||
Sbjct: 32 gctctcatatttattcacagagggagta 5
Score = 58.0 bits (29), Expect = 2e-08
Identities = 75/88 (85%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcact--taag-tagtgatctaaac 65
|||||||||||| || |||||| |||| |||||||||||| || |||||||||||||
Sbjct: 5 tactccctctgtgaataaatatgagagcgtttagatcactactactctagtgatctaaac 64
Query: 66 gctcttatatttctttacggagggagta 93
||||||||||| ||||| ||||||||
Sbjct: 65 gctcttatattattttacatagggagta 92
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||||||||| ||||| ||| |||||||||||| |||| ||||||||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgct 30
Query: 69 cttatatttctttacggagggagtac 94
||||||| ||||||||||||||||
Sbjct: 29 tttatattagtttacggagggagtac 4
Score = 60.0 bits (30), Expect = 6e-09
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
|||||||||| ||||| ||||| | || ||||||| ||| || ||||||||||||||
Sbjct: 4 gtactccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgt 63
Query: 68 tcttatatttctttacggagggagta 93
||||||||| ||||| |||||||||
Sbjct: 64 tcttatattagtttacagagggagta 89
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 12 tccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgctctt 71
||||| |||||| ||||| |||| ||| |||||| | || | ||||||||||| |||||
Sbjct: 8 tccctttgtaaactaatataagagcgttgagatcattaaaattgtgatctaaactctctt 67
Query: 72 atatttctttacggagggagt 92
||||| ||||||||||||||
Sbjct: 68 atattagtttacggagggagt 88
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||| ||||| ||||| ||| ||||||| ||| |||||||| |||||| |||
Sbjct: 5 tactccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgct 64
Query: 69 cttatatttctttacggagggagta 93
|||||||| |||| ||||||||||
Sbjct: 65 cttatattagtttatggagggagta 89
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 53 tagtgatctaaacgctcttatatttctttacggagggag 91
|||||||||||| | |||||||||||||||| |||||||
Sbjct: 38 tagtgatctaaatgatcttatatttctttacagagggag 76
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 61 taaacgctcttatatttctttacggagggagta 93
|||||| |||||||||||||||| |||||||||
Sbjct: 37 taaacgatcttatatttctttacagagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatat 30
||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaagaaatat 26
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 11 ctccctctgtaaagaaatattagagtgtttagatcact 48
|||||||||||||||||||| ||| |||||||||||
Sbjct: 76 ctccctctgtaaagaaatataagatcatttagatcact 39
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 71/85 (83%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 12 tccctctgtaaagaaatattagagtgtttagatcactta--agtagtgatctaaacgctc 69
|||||||||||| ||||| ||| ||||||||||| | |||||||||||||| | ||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtc 67
Query: 70 ttatatttctttacggagggagtac 94
||||||| ||||| ||||||||||
Sbjct: 68 ttatattagtttacagagggagtac 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 75/91 (82%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 7 tgtactccctctgtaaagaaatattagagtgtttagatcact--taagtagtgatctaaa 64
||||||||||||||||| ||||| ||| ||||||||||| || ||||||||||||
Sbjct: 93 tgtactccctctgtaaactaatataagaccttttagatcactactacttagtgatctaaa 34
Query: 65 cgctcttatatttctttacggagggagtact 95
| ||||||||| ||||| |||||| ||||
Sbjct: 33 aggtcttatattagtttacagagggaatact 3
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 59 tctaaacgctcttatatttctttacggaggga 90
|||||||||||||||||| ||||||||||||
Sbjct: 39 tctaaacgctcttatattagtttacggaggga 8
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 62 aaacgctcttatatttctttacggagggagtact 95
||||||||||||||| ||||| |||||||||||
Sbjct: 65 aaacgctcttatattagtttacagagggagtact 98
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 acgctcttatatttctttacggagggagta 93
||||||||||||| |||||||||||||||
Sbjct: 33 acgctcttatattagtttacggagggagta 62
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
|||||||||| |||| ||||| |||| ||||||| | | || |||||||||||| ||
Sbjct: 90 gtactccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgc 31
Query: 68 tcttatatttctttacggagggagta 93
| ||||||| ||||| |||||||||
Sbjct: 30 ttttatattagtttacagagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||||||||| ||||| | || ||||||||||| || | ||||||| |||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgct 64
Query: 69 cttatatttctttacggagggagtac 94
|||||||| |||| |||||||||||
Sbjct: 65 cttatattagtttatggagggagtac 90
