miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AB298184.1/14323-14229 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 79 aaaaacgtcttacattatgggacggag 105
|||||||||||||||||||||||||||
Sbjct: 59 aaaaacgtcttacattatgggacggag 85
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 79 aaaaacgtcttacattatgggacggag 105
|||||||||||||||||||||||||||
Sbjct: 57 aaaaacgtcttacattatgggacggag 83
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcgtaatgtaagacgttttt 43
||||||||||||| | |||||||||||||||||
Sbjct: 89 tactccctccgtcccataatgtaagacgttttt 57
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 79 aaaaacgtcttacattatgggacggag 105
|||||||||||||||||||||||||||
Sbjct: 37 aaaaacgtcttacattatgggacggag 11
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 10 atactccctccgtctcgtaatgtaagacgttttt 43
|||||||||||||| | |||||||||||||||||
Sbjct: 4 atactccctccgtcccataatgtaagacgttttt 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 79 aaaaacgtcttacattatgggacggag 105
||||||||| |||||||||||||||||
Sbjct: 75 aaaaacgtcctacattatgggacggag 101
>RF00906;MIR1122;EU187471.1/291-190 40247:Dasypyrum villosum
Length = 102
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 79 aaaaacgtcttacattatgggacggag 105
|||||||||||||||||||||||||||
Sbjct: 37 aaaaacgtcttacattatgggacggag 11
>RF00906;MIR1122;DQ247823.1/803-901 4487:Aegilops searsii
Length = 99
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 79 aaaaacgtcttacattatgggacggag 105
|||||||||||||||||||||||||||
Sbjct: 64 aaaaacgtcttacattatgggacggag 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 79 aaaaacgtcttacattatgggacg 102
||||||||||||||||||||||||
Sbjct: 37 aaaaacgtcttacattatgggacg 14
>RF00906;MIR1122;FJ436986.1/65665-65790 37682:Aegilops tauschii
Length = 126
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 79 aaaaacgtcttacattatgggacggag 105
|||||||||||||||||||||||||||
Sbjct: 35 aaaaacgtcttacattatgggacggag 61
>RF00906;MIR1122;EF397435.1/125-217 4588:Lophopyrum elongatum
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 75 ttgcaaaaacgtcttacattatgggacgga 104
|||||||||||| |||||||||||||||||
Sbjct: 41 ttgcaaaaacgtattacattatgggacgga 12
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 74 tttgcaaaaacgtcttacattatggga 100
|||| ||||||||||||||||||||||
Sbjct: 52 tttgtaaaaacgtcttacattatggga 78
>RF00906;MIR1122;DQ247832.1/803-901 4487:Aegilops searsii
Length = 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 80 aaaacgtcttacattatgggacggag 105
||||||||||||||||||||||||||
Sbjct: 65 aaaacgtcttacattatgggacggag 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 aaaacgtcttacattatgggacg 102
|||||||||||||||||||||||
Sbjct: 36 aaaacgtcttacattatgggacg 14
>RF00906;MIR1122;EU626553.1/80596-80503 4572:Triticum urartu
Length = 94
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcgtaatgtaagacgttttt 43
||||||||| ||||| |||||||||||||||||
Sbjct: 5 tactccctctgtctcataatgtaagacgttttt 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 79 aaaaacgtcttacattatgggacggag 105
||||| |||||||||||||||||||||
Sbjct: 58 aaaaatgtcttacattatgggacggag 84
>RF00906;MIR1122;EF426564.1/124146-124054 4571:Triticum turgidum
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 79 aaaaacgtcttacattatgggacggag 105
|||||| ||||||||||||||||||||
Sbjct: 37 aaaaacctcttacattatgggacggag 11
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 9 tatactccctccgtctcgtaatgtaagacgttttt 43
||||||||||||||| | |||||||||||| ||||
Sbjct: 3 tatactccctccgtcccataatgtaagacgctttt 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 79 aaaaacgtcttacattatgggacggag 105
|||| ||||||||||||||||||||||
Sbjct: 37 aaaagcgtcttacattatgggacggag 11
>RF00906;MIR1122;AM932680.1/129176-129267 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 79 aaaaacgtcttacattatggga 100
||||||||||||||||||||||
Sbjct: 37 aaaaacgtcttacattatggga 16
>RF00906;MIR1122;AP005261.4/109260-109376 39947:Oryza sativa
Japonica Group
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 tatactccctccgtctcgtaatgtaagacgtttt 42
|||||||||||||| || ||||||||||| ||||
Sbjct: 3 tatactccctccgtttcataatgtaagacttttt 36
>RF00906;MIR1122;ABRL01000382.1/8325-8450 65489:Oryza barthii
Length = 126
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtctcgtaatgtaagac 37
||||||||||||||| || |||||||||||
Sbjct: 125 ttatactccctccgtttcataatgtaagac 96
>RF00906;MIR1122;AAAA02008053.1/17150-17309 39946:Oryza sativa
Indica Group
Length = 160
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtctcgtaatgtaagac 37
||||||||||||||| || |||||||||||
Sbjct: 159 ttatactccctccgtttcataatgtaagac 130
>RF00906;MIR1122;AC120529.3/33430-33575 39947:Oryza sativa
Japonica Group
Length = 146
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 8 ttatactccctccgtctcgtaatgtaagac 37
||||||||||||||| || |||||||||||
Sbjct: 2 ttatactccctccgtttcataatgtaagac 31
