miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;ABXC01004286.1/22135-21991 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 161 bits (81), Expect = 3e-39
Identities = 120/133 (90%)
Strand = Plus / Plus
Query: 1 ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaaggcctat 60
||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||| |
Sbjct: 5 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatgtaggaaggccttt 64
Query: 61 gaggttgaaacctcattttgtgtcttcctaatgcctcccattcctatcgttcttaggtga 120
||| | |||| ||||||||| |||||||| ||||||||||| ||||| |||||||||||
Sbjct: 65 gagatggaaagctcattttgggtcttcctgatgcctcccatgcctattgttcttaggtgc 124
Query: 121 tccttcctcttgc 133
|||||||||||||
Sbjct: 125 tccttcctcttgc 137
>RF01911;MIR2118;AC135459.3/87322-87489 39947:Oryza sativa
Japonica Group
Length = 168
Score = 83.8 bits (42), Expect = 5e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 1 ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaag 54
||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 5 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggaggaag 58
>RF01911;MIR2118;AP008210.1/21658799-21658648 39947:Oryza sativa
Japonica Group
Length = 152
Score = 77.8 bits (39), Expect = 3e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 85 ttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 96 ttcctaatgcctcccattcctattgttcttaggtgctccttcctctt 142
>RF01911;MIR2118;AL606706.3/88345-88174 39947:Oryza sativa Japonica
Group
Length = 172
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 91 atgcctcccattcctatcgttcttaggtgatccttcctctt 131
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 122 atgcctcccattcctatcgttcttaggtgctccttcctctt 162
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 21 tctaagagcagtgggcatgggaacatggaggaa 53
||||||||||||||| |||||||||| ||||||
Sbjct: 26 tctaagagcagtgggaatgggaacatagaggaa 58
>RF01911;MIR2118;AP008217.1/7727087-7726916 39947:Oryza sativa
Japonica Group
Length = 172
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 91 atgcctcccattcctatcgttcttaggtgatccttcctctt 131
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 122 atgcctcccattcctatcgttcttaggtgctccttcctctt 162
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 20 atctaagagcagtgggcatgggaacatggaggaa 53
|||||||||||||||| ||||||||||| ||||
Sbjct: 25 atctaagagcagtgggagtgggaacatggtggaa 58
>RF01911;MIR2118;ABXC01004282.1/27623-27465 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 69.9 bits (35), Expect = 8e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 85 ttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
|||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 103 ttcccaatgcctcccattcctatcgttcttaggttctccttcctctt 149
Score = 44.1 bits (22), Expect = 5e-04
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 1 ggaagaggaagtaa-agatgatctaagagcagtgggcatgggaacatggaggaa 53
||||||||||| || |||| |||||||||| |||| |||||| ||||||||||
Sbjct: 5 ggaagaggaagaaagagatagtctaagagcaatgggaatgggagcatggaggaa 58
>RF01911;MIR2118;ABXC01004283.1/14206-14032 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 69.9 bits (35), Expect = 8e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 85 ttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 119 ttcctgatgcctcccattcctatggttcttaggtgctccttcctctt 165
>RF01911;MIR2118;ABXC01004282.1/24617-24453 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 21 tctaagagcagtgggcatgggaacatggaggaa 53
|||||||||||||||||||||||||||||||||
Sbjct: 25 tctaagagcagtgggcatgggaacatggaggaa 57
>RF01911;MIR2118;AL606706.3/90746-90578 39947:Oryza sativa
Japonica Group
Length = 169
Score = 65.9 bits (33), Expect = 1e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1 ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaa 53
||||||||||| ||||| | ||| ||||| |||||||||||||||||||||||
Sbjct: 5 ggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggaggaa 57
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 85 ttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
||||| ||||||||||| ||||| ||||| || || |||||||||||
Sbjct: 113 ttcctgatgcctcccatgcctattgttctcagatgctccttcctctt 159
>RF01911;MIR2118;AAAA02013919.1/23719-23885 39946:Oryza sativa
Indica Group
Length = 167
Score = 65.9 bits (33), Expect = 1e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1 ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaa 53
||||||||||| | ||| | ||||||||||||||||||||||||||||||||
Sbjct: 5 ggaagaggaagaatagagcacctaagagcagtgggcatgggaacatggaggaa 57
>RF01911;MIR2118;ABXC01004282.1/25056-24902 4558:Sorghum bicolor
(sorghum)
Length = 155
Score = 63.9 bits (32), Expect = 5e-10
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 80 gtgtcttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
|||| ||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct: 94 gtgttttcctgatgcctcccattcctacagttcttaggtgctccttcctctt 145
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 22 ctaagagcagtgggcatgggaacatggaggaa 53
|||||||| ||||| |||||||||||||||||
Sbjct: 27 ctaagagcggtgggaatgggaacatggaggaa 58
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 63.9 bits (32), Expect = 5e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 92 tgcctcccattcctatcgttcttaggtgatccttcctctt 131
|||||||||||||||| ||||||||||| |||||||||||
Sbjct: 126 tgcctcccattcctattgttcttaggtgctccttcctctt 165
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 21 tctaagagcagtgggcatgggaacatggaggaa 53
||||||||||||||| |||||||||||||||||
Sbjct: 26 tctaagagcagtgggaatgggaacatggaggaa 58
>RF01911;MIR2118;ABXC01004282.1/27391-27234 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 85 ttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
|||| |||||||||||| ||||| ||||||||||| |||||||||||
Sbjct: 102 ttcccaatgcctcccatgcctattgttcttaggtgttccttcctctt 148
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgggcatgggaacatggaggaa 53
||||||||||||||||||||||
Sbjct: 37 tgggcatgggaacatggaggaa 58
>RF01911;MIR2118;ABXC01004286.1/22374-22204 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 22 ctaagagcagtgggcatgggaacatggaggaaggcctat 60
|||||||||||||| ||||||||||||||||| ||||||
Sbjct: 27 ctaagagcagtgggaatgggaacatggaggaaagcctat 65
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 85 ttcctaatgcctcccattcctatcgttcttaggtgatccttcct 128
|||| |||||||||||||||||| ||||||| ||| ||| ||||
Sbjct: 115 ttcccaatgcctcccattcctattgttcttaagtgctccatcct 158
>RF01911;MIR2118;AP008210.1/21663107-21662944 39947:Oryza sativa
Japonica Group
Length = 164
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 85 ttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
||||| ||||||||||||||||| ||||||||||| || ||||||||
Sbjct: 108 ttcctgatgcctcccattcctatagttcttaggtgctcgttcctctt 154
>RF01911;MIR2118;AACV01009812.1/23383-23542 39947:Oryza sativa
Japonica Group
Length = 160
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 77 tttgtgtcttcctaatgcctcccattcctatcgttcttaggtgatccttcc 127
||||||| ||||| ||||||||||||||||| |||||| |||| |||||||
Sbjct: 96 tttgtgttttcctgatgcctcccattcctattgttcttgggtgctccttcc 146
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 27 agcagtgggcatgggaacatggaggaa 53
||||||||| |||||||||||||||||
Sbjct: 32 agcagtgggaatgggaacatggaggaa 58
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa
Indica Group
Length = 172
Score = 60.0 bits (30), Expect = 8e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 22 ctaagagcagtgggcatgggaacatggaggaaggccta 59
|||||||||||||| ||||||||||||||||| |||||
Sbjct: 27 ctaagagcagtgggaatgggaacatggaggaaagccta 64
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 91 atgcctcccattcctatcgttctta 115
|||||||||||||||||||||||||
Sbjct: 122 atgcctcccattcctatcgttctta 146
>RF01911;MIR2118;AACV01009812.1/26461-26632 39947:Oryza sativa
Japonica Group
Length = 172
Score = 58.0 bits (29), Expect = 3e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 1 ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaa 53
||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 5 ggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaa 57
>RF01911;MIR2118;ABXC01004286.1/17945-17773 4558:Sorghum bicolor
(sorghum)
Length = 173
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 22 ctaagagcagtgggcatgggaacatggaggaa 53
|||||||||||||| |||||||||||||||||
Sbjct: 27 ctaagagcagtgggaatgggaacatggaggaa 58
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 92 tgcctcccattcctatcgttctta 115
||||||||||||||||||||||||
Sbjct: 124 tgcctcccattcctatcgttctta 147
>RF01911;MIR2118;AL606706.3/95450-95277 39947:Oryza sativa Japonica
Group
Length = 174
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 76 ttttgtgtcttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
|||||||| |||||| |||||||||||||||| || ||||| | |||||||||||
Sbjct: 109 ttttgtgttttcctagtgcctcccattcctattgtccttagatactccttcctctt 164
>RF01911;MIR2118;AACV01009812.1/17181-17352 39947:Oryza sativa
Japonica Group
Length = 172
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 76 ttttgtgtcttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
|||||||| |||||||||| |||||||||||| ||| |||| | |||||||||||
Sbjct: 107 ttttgtgttttcctaatgcttcccattcctattgttgttagatactccttcctctt 162
>RF01911;MIR2118;ABXC01004283.1/19912-19741 4558:Sorghum bicolor
(sorghum)
Length = 172
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 25 agagcagtgggcatgggaacatggaggaa 53
||||||||||| |||||||||||||||||
Sbjct: 30 agagcagtgggaatgggaacatggaggaa 58
>RF01911;MIR2118;AL606706.3/87890-87721 39947:Oryza sativa
Japonica Group
Length = 170
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 22 ctaagagcagtgggcatgggaacatggaggaaggcct 58
||||||||| | |||||||||||||||||||| ||||
Sbjct: 27 ctaagagcattaggcatgggaacatggaggaaagcct 63
>RF01911;MIR2118;ABXC01004282.1/24832-24688 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 92 tgcctcccattcctatcgttcttaggtgatccttcctctt 131
|||||| |||||||| ||||||||||| |||||||||||
Sbjct: 96 tgcctctcattcctacggttcttaggtgctccttcctctt 135
>RF01911;MIR2118;AAAA02013919.1/25848-26037 39946:Oryza sativa
Indica Group
Length = 190
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 91 atgcctcccattcctatcgttctt 114
||||||||||||||||||||||||
Sbjct: 140 atgcctcccattcctatcgttctt 163
>RF01911;MIR2118;AL606706.3/95698-95530 39947:Oryza sativa Japonica
Group
Length = 169
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 85 ttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
||||| ||||||| ||||||||| ||||| |||| |||||||||||
Sbjct: 113 ttcctgatgcctctcattcctatggttctagggtgctccttcctctt 159
>RF01911;MIR2118;AP008210.1/21667363-21667201 39947:Oryza sativa
Japonica Group
Length = 163
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 85 ttcctaatgcctcccattcctatcgttcttaggt 118
||||| |||||||||||||||| ||||||||||
Sbjct: 107 ttcctgatgcctcccattcctacagttcttaggt 140
