miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 99.6 bits (50), Expect = 2e-20
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 6 aaggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctga 65
|||||||||||||||||||||||||| ||||| ||| | | ||||| |||||||||||||
Sbjct: 5 aaggagtggagctccttgaagtccaatagaggatcttg-atgggtagattgagctgctga 63
Query: 66 gctatggatcccacagtcctat 87
|||||||||||||||| |||||
Sbjct: 64 gctatggatcccacagccctat 85
Score = 69.9 bits (35), Expect = 1e-11
Identities = 74/86 (86%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 125 gataggcttgtggcttgcatatttctggagcttcattaccccttaagttttacccttttt 184
|||||||||||||||||||||| || |||||||||||| |||| || | |||| ||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagcttcatta--ccttgtattagatccttgtt 163
Query: 185 tggattgaagggagctctacctctct 210
|||||||||||||||||||| |||||
Sbjct: 164 tggattgaagggagctctacatctct 189
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 83.8 bits (42), Expect = 9e-16
Identities = 77/86 (89%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagc 67
|||||||||||||||||||||||| ||||||||| || ||||| ||| ||||||| |||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgc-tgggtagattaagctgctaagc 65
Query: 68 tatggatcccacagtcctatgtatca 93
||||||| |||||||||||| |||||
Sbjct: 66 tatggat-ccacagtcctatctatca 90
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 181 tttttggattgaagggagctcta 203
|||||||||||||||||||||||
Sbjct: 152 tttttggattgaagggagctcta 174
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 71.9 bits (36), Expect = 3e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagc 67
|||||||||||||||||||||||| ||||| ||| | ||||| |||||||||||||
Sbjct: 7 ggagtggagctccttgaagtccaatagagggtcttac-tgggtagattgagctgctgact 65
Query: 68 tatggatcccacagtcctat 87
|||||||||||||| |||||
Sbjct: 66 tatggatcccacagccctat 85
Score = 61.9 bits (31), Expect = 3e-09
Identities = 70/81 (86%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 125 gataggcttgtggcttgcatatttctggagcttcattaccccttaagttt-taccctttt 183
|||||||||||||||||||||| || |||||| ||||| || |||||| | |||| |
Sbjct: 106 gataggcttgtggcttgcatatctcaggagctgcattatcc---aagtttagatccttgt 162
Query: 184 ttggattgaagggagctctac 204
|||||||||||||||||||||
Sbjct: 163 ttggattgaagggagctctac 183
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 63.9 bits (32), Expect = 8e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagc 67
|||||||||||||||||||||||| ||| | |||| | ||| || ||||||||||||| |
Sbjct: 7 ggagtggagctccttgaagtccaacagaagatctaac-aggttagattgagctgctgacc 65
Query: 68 tatggatcccacagtcctat 87
||||||| || ||| |||||
Sbjct: 66 tatggattcctcagccctat 85
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 180 ttttttggattgaagggagctctac 204
|||||||||||||||||||||||||
Sbjct: 165 ttttttggattgaagggagctctac 189
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 61.9 bits (31), Expect = 3e-09
Identities = 67/78 (85%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 127 taggcttgtggcttgcatatttctggagcttcattaccccttaagttttacccttttttg 186
|||||||| || |||||||| || |||||| |||||||| |||| || | |||| ||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccc--taagcttaatccttgtttg 165
Query: 187 gattgaagggagctctac 204
||||||||||||||||||
Sbjct: 166 gattgaagggagctctac 183
Score = 58.0 bits (29), Expect = 5e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 14 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 73
|||||||||||||||||| ||||| | | ||| |||| |||||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgca-gggttgattgagctgccgagctatgga 71
Query: 74 tcccacagtccta 86
| |||||| ||||
Sbjct: 72 ttccacagcccta 84
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 52.0 bits (26), Expect = 3e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 14 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 73
|||||||||||||||||| ||| | || || ||||| || |||||||||||||||| |
Sbjct: 1 gagctccttgaagtccaatagaagctcctgct-gggtagatcgagctgctgagctatgaa 59
Query: 74 tcccacagtcctat 87
|||||||| |||||
Sbjct: 60 tcccacagccctat 73
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 180 ttttttggattgaagggagctct 202
|||||||||||||||||||||||
Sbjct: 143 ttttttggattgaagggagctct 165
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 46 agggtaaattgagctgctgagctatggatcccacagtcctat 87
|||| ||||||||||||||| ||||||||||| || ||||||
Sbjct: 44 agggaaaattgagctgctgatctatggatccctcaatcctat 85
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 172 ttttacccttttttggattgaagggagctctac 204
|||||| ||| ||||||||||||||||||||||
Sbjct: 161 ttttactcttctttggattgaagggagctctac 193
