miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02006966.1/10750-10616 39946:Oryza sativa
Indica Group
Length = 135
Score = 48.1 bits (24), Expect = 5e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 21 tgtacttcctccctcttaaaaagaatcaacct 52
|||||||||||| || ||||||||||||||||
Sbjct: 133 tgtacttcctccgtcctaaaaagaatcaacct 102
>RF00906;MIR1122;AC136448.2/118247-118097 39947:Oryza sativa
Japonica Group
Length = 151
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 72 tcctaagacaacgaatctggacaatgt 98
|||||| ||||||||||||||||||||
Sbjct: 99 tcctaatacaacgaatctggacaatgt 73
>RF00906;MIR1122;AP003073.2/49344-49251 39947:Oryza sativa
Japonica Group
Length = 94
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 tcctaagacaacgaatctggaca 94
|||||||||||||||||||||||
Sbjct: 40 tcctaagacaacgaatctggaca 62
