miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AL662959.3/95147-95258 39947:Oryza sativa
Japonica Group
Length = 112
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 10 atctactctatccgtcccaaaatataagcaatttt 44
|||||||| |||||||||||||||||||||||||
Sbjct: 2 atctactccctccgtcccaaaatataagcaatttt 36
>RF00906;MIR1122;AACV01022357.1/4100-4210 39947:Oryza sativa
Japonica Group
Length = 111
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 11 tctactctatccgtcccaaaatataagcaatttt 44
||||||| ||||||||||||||||||||| ||||
Sbjct: 109 tctactccatccgtcccaaaatataagcattttt 76
>RF00906;MIR1122;AAAA02019805.1/1437-1583 39946:Oryza sativa Indica
Group
Length = 147
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 13 tactctatccgtcccaaaatataag 37
|||||||||||||||||||||||||
Sbjct: 143 tactctatccgtcccaaaatataag 119
>RF00906;MIR1122;AAAA02000488.1/65172-65284 39946:Oryza sativa
Indica Group
Length = 113
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 12 ctactctatccgtcccaaaatataagcaatttt 44
|||||| ||||||||||||||||||||| ||||
Sbjct: 110 ctactccatccgtcccaaaatataagcattttt 78
>RF00906;MIR1122;AP008209.1/27314174-27314047 39947:Oryza sativa
Japonica Group
Length = 128
Score = 50.1 bits (25), Expect = 1e-05
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 10 atctactctatccgtcccaaaatataagcaattttcggtgcatctgaca 58
|||||||| ||||||||||||||||||| ||||| |||| || |||||
Sbjct: 127 atctactccatccgtcccaaaatataagagattttgggtggatatgaca 79
>RF00906;MIR1122;AAAA02007751.1/21104-20995 39946:Oryza sativa
Indica Group
Length = 110
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 13 tactctatccgtcccaaaatataagcaatttt 44
|||||| |||||||||||||||||||| ||||
Sbjct: 5 tactctctccgtcccaaaatataagcattttt 36
>RF00906;MIR1122;AP008216.1/22670503-22670626 39947:Oryza sativa
Japonica Group
Length = 124
Score = 48.1 bits (24), Expect = 4e-05
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 10 atctactctatccgtcccaaaatataagcaattttcggtgcatctgacatatcgtaggcc 69
|||||||| |||||||||||||||||| ||||| |||||| ||||| ||| || | |
Sbjct: 123 atctactccctccgtcccaaaatataagagattttgtgtgcatgtgacacatcctaagac 64
Query: 70 tatgaatc 77
||||||||
Sbjct: 63 tatgaatc 56
>RF00906;MIR1122;AP008217.1/17152537-17152413 39947:Oryza sativa
Japonica Group
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 13 tactctatccgtcccaaaatataagcaatttt 44
|||||| |||||||||||||||||| ||||||
Sbjct: 5 tactctctccgtcccaaaatataaggaatttt 36
>RF00906;MIR1122;AP005569.2/105921-105796 39947:Oryza sativa
Japonica Group
Length = 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 13 tactctatccgtcccaaaatataagcaatttt 44
||||| ||||||||||||||||||||| ||||
Sbjct: 5 tactccatccgtcccaaaatataagcattttt 36
>RF00906;MIR1122;AP008217.1/27843705-27843861 39947:Oryza sativa
Japonica Group
Length = 157
Score = 48.1 bits (24), Expect = 4e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 94 cagattcatagtcgtagtatatgtcacgtccacataaaatcctttatatttt 145
|||||||||||| ||| ||||||| | ||||| |||||||||||||||||
Sbjct: 87 cagattcatagtactagaatatgtcccatccacccaaaatcctttatatttt 138
>RF00906;MIR1122;AACV01024885.1/21195-21061 39947:Oryza sativa
Japonica Group
Length = 135
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 20 tccgtcccaaaatataagcaattttcggtgcatctgacatatc 62
|||||||||||||||||| ||||| |||| || |||||||||
Sbjct: 124 tccgtcccaaaatataagagattttgggtggatgtgacatatc 82
>RF00906;MIR1122;AAAA02029204.1/1438-1301 39946:Oryza sativa Indica
Group
Length = 138
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 115 tgtcacgtccacataaaatcctttatatttt 145
|||||||||||| |||||||||||||||||
Sbjct: 90 tgtcacgtccacccaaaatcctttatatttt 120
>RF00906;MIR1122;AP008209.1/8919908-8919797 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 10 atctactctatccgtcccaaaatataagcaatttt 44
|||||||| |||||||||||||||||||| ||||
Sbjct: 111 atctactccctccgtcccaaaatataagcattttt 77
>RF00906;MIR1122;AACV01025228.1/13353-13452 39947:Oryza sativa
Japonica Group
Length = 100
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 10 atctactctatccgtcccaaaatataagcaatttt 44
|||||||| |||||||||||||||||||| ||||
Sbjct: 2 atctactccctccgtcccaaaatataagcattttt 36
>RF00906;MIR1122;AP008210.1/24813715-24813809 39947:Oryza sativa
Japonica Group
Length = 95
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactctatccgtcccaaaatataagca 39
|||||| ||||||||||||||||||||
Sbjct: 5 tactctctccgtcccaaaatataagca 31
>RF00906;MIR1122;AACV01009917.1/1696-1588 39947:Oryza sativa
Japonica Group
Length = 109
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 11 tctactctatccgtcccaaaatataagcaatttt 44
||||||| |||||||||||||||||||| ||||
Sbjct: 3 tctactcactccgtcccaaaatataagcattttt 36
>RF00906;MIR1122;AC123523.2/18009-18132 39947:Oryza sativa Japonica
Group
Length = 124
Score = 44.1 bits (22), Expect = 6e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 96 gattcatagtcgtagtatatgtcacgtccacataaaatcctttatatttt 145
||||||||||| | | ||||||||| ||||| |||||||| |||||||||
Sbjct: 68 gattcatagtcct-gaatatgtcacatccacctaaaatcccttatatttt 20
>RF00906;MIR1122;AC135427.3/71840-71709 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 ctactctatccgtcccaaaatataag 37
||||||| ||||||||||||||||||
Sbjct: 4 ctactctctccgtcccaaaatataag 29
>RF00906;MIR1122;AAAA02028032.1/2328-2217 39946:Oryza sativa Indica
Group
Length = 112
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 11 tctactctatccgtcccaaaatataagcaatttt 44
||||||| |||||||||||||||||||| ||||
Sbjct: 110 tctactccctccgtcccaaaatataagcattttt 77
>RF00906;MIR1122;AC217198.1/129397-129553 4537:Oryza punctata
Length = 157
Score = 44.1 bits (22), Expect = 6e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 13 tactctatccgtcccaaaatataagcaattttcggtgcatctgaca 58
|||||| |||||||||||||||||| ||||| |||| || |||||
Sbjct: 5 tactctctccgtcccaaaatataagggattttaggtgaatgtgaca 50
