miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 172 bits (87), Expect = 6e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 9 cgccataagcaggtgaagctgccagcatgatctgaaagcatctcaaaccagcgatcagat 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgccataagcaggtgaagctgccagcatgatctgaaagcatctcaaaccagcgatcagat 60
Query: 69 catccggcagcttcatcttctcatggc 95
|||||||||||||||||||||||||||
Sbjct: 61 catccggcagcttcatcttctcatggc 87
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
bicolor (sorghum)
Length = 113
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctgaaagcat 49
||||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgaaagcat 41
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 taagcaggtgaagctgccagcatgatctga 43
||||||| ||||||||||||||||||||||
Sbjct: 6 taagcagctgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 62 atcagatcatccggcagcttcatcttctcatggc 95
||||||||||| ||||| ||||||||||||||||
Sbjct: 85 atcagatcatctggcagtttcatcttctcatggc 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctga 43
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 taagcaggtgaagctgccagcatgatctga 43
||||||| ||||||||||||||||||||||
Sbjct: 6 taagcagctgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 agcaggtgaagctgccagcatgatctga 43
||||| ||||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ggtgaagctgccagcatgatctga 43
||||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatctga 35
>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
Group
Length = 125
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ggtgaagctgccagcatgatctga 43
||||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatctga 35
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 aagcaggtgaagctgccagcatgatct 41
|||||| ||||||||||||||||||||
Sbjct: 7 aagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aggtgaagctgccagcatgatct 41
|||||||||||||||||||||||
Sbjct: 11 aggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctgaa 44
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgaa 36
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aggtgaagctgccagcatgatct 41
|||||||||||||||||||||||
Sbjct: 11 aggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ggtgaagctgccagcatgatctg 42
|||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatctg 34
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ggtgaagctgccagcatgatctg 42
|||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatctg 34
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 agcaggtgaagctgccagcatgatct 41
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 agcaggtgaagctgccagcatgatct 41
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 agcaggtgaagctgccagcatgatct 41
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 agcaggtgaagctgccagcatgatct 41
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 agcaggtgaagctgccagcatgatct 41
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 agcaggtgaagctgccagcatgatct 41
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 agcaggtgaagctgccagcatgatct 41
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctga 43
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctga 43
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01000844.1/72139-72006 4558:Sorghum bicolor
(sorghum)
Length = 134
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctga 43
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AP003800.3/19613-19499 39947:Oryza sativa
Japonica Group
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctga 43
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
