miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00163;Hammerhead_1;CABF01051235.1/10833-10789 6182:Schistosoma
japonicum
Length = 45
Score = 46.1 bits (23), Expect = 6e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 17 atccaggacacgcgtttagtcttattccgaactcttcagctgg 59
||||||||| |||||||||||||||| | |||| ||||||||
Sbjct: 45 atccaggacgagcgtttagtcttattcggtactcgtcagctgg 3
>RF00163;Hammerhead_1;CABF01001094.1/163-207 6182:Schistosoma
japonicum
Length = 45
Score = 46.1 bits (23), Expect = 6e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 18 tccaggacacgcgtttagtcttattccgaactcttcagctgga 60
|||||||| ||||||||||||| || |||||| |||||||||
Sbjct: 44 tccaggacgcgcgtttagtcttgtttggaactcgtcagctgga 2
>RF00163;Hammerhead_1;CABF01061800.1/6442-6486 6182:Schistosoma
japonicum
Length = 45
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 28 gcgtttagtcttattccgaactcttcagctggat 61
||||||||||||||| || |||| ||||||||||
Sbjct: 34 gcgtttagtcttatttcggactcatcagctggat 1
>RF00163;Hammerhead_1;FN362200.1/100-57 6183:Schistosoma mansoni
Length = 44
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 atccaggacacgcgtttagtc 37
|||||||||||||||||||||
Sbjct: 44 atccaggacacgcgtttagtc 24
>RF00163;Hammerhead_1;CABF01007610.1/639-683 6182:Schistosoma
japonicum
Length = 45
Score = 42.1 bits (21), Expect = 9e-04
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 17 atccaggacacgcgtttagtcttattccgaactcttcagctggat 61
|||||| |||||||||||||| || | |||||| ||||||||||
Sbjct: 45 atccagtacacgcgtttagtcctacttggaactcatcagctggat 1
>RF00163;Hammerhead_1;CABF01012396.1/907-951 6182:Schistosoma
japonicum
Length = 45
Score = 42.1 bits (21), Expect = 9e-04
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 17 atccaggacacgcgtttagtcttattccgaactcttcagctggat 61
|||||||||||||||||| || |||| | ||||||| |||||||
Sbjct: 45 atccaggacacgcgtttaatcctatttgggactcttcggctggat 1
