miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00163;Hammerhead_1;FN357860.1/107160-107205 6183:Schistosoma
mansoni
Length = 46
Score = 91.7 bits (46), Expect = 1e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 15 gcactgctgaggatttccacagtaggaagaaacggccgtacagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcactgctgaggatttccacagtaggaagaaacggccgtacagtcc 46
>RF00163;Hammerhead_1;FN373912.1/1869-1914 6183:Schistosoma
mansoni
Length = 46
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 15 gcactgctgaggatttccacagtaggaagaaacggc 50
||||||||||||| ||||||||||||| ||||||||
Sbjct: 1 gcactgctgaggagttccacagtaggacgaaacggc 36
>RF00163;Hammerhead_1;FN374730.1/3205-3250 6183:Schistosoma
mansoni
Length = 46
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 15 gcactgctgaggatttccacagtaggaagaaacggccgt 53
||||||||||||| ||||||| ||||| |||||||||||
Sbjct: 1 gcactgctgaggaattccacaataggacgaaacggccgt 39
>RF00163;Hammerhead_1;FN357486.1/754134-754089 6183:Schistosoma
mansoni
Length = 46
Score = 52.0 bits (26), Expect = 1e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 15 gcactgctgaggatttccacagtaggaagaaacggccgtacagtcc 60
||||||||||||| | ||||||||||| |||||| |||| ||||||
Sbjct: 1 gcactgctgaggagtcccacagtaggacgaaacgcccgtccagtcc 46
>RF00163;Hammerhead_1;FN368461.1/392-437 6183:Schistosoma mansoni
Length = 46
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 15 gcactgctgaggatttccacagtaggaagaaacggcc 51
||||||||||||| ||||||| ||||| |||||||||
Sbjct: 1 gcactgctgaggagttccacaataggacgaaacggcc 37
>RF00163;Hammerhead_1;FN357585.1/163282-163327 6183:Schistosoma
mansoni
Length = 46
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 15 gcactgctgaggatttccacagtaggaagaaacggccgtacagt 58
||||||||||||| | |||||||| ||| |||||||||| ||||
Sbjct: 1 gcactgctgaggagtcccacagtatgaaaaaacggccgtccagt 44
>RF00163;Hammerhead_1;CABF01004692.1/482-437 6182:Schistosoma
japonicum
Length = 46
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 15 gcactgctgaggatttccacagtaggaagaaacggc 50
||||||||||||| ||||||| ||||| ||||||||
Sbjct: 1 gcactgctgaggagttccacactaggaggaaacggc 36
>RF00163;Hammerhead_1;FN357905.1/51920-51964 6183:Schistosoma
mansoni
Length = 45
Score = 46.1 bits (23), Expect = 7e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 20 gctgaggatttccacagtaggaagaaacggccgtacagt 58
|||||||| | ||||||||||| ||||||||||| ||||
Sbjct: 5 gctgaggagtcccacagtaggacgaaacggccgttcagt 43
>RF00163;Hammerhead_1;FN357360.1/494068-494023 6183:Schistosoma
mansoni
Length = 46
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 16 cactgctgaggatttccacagtaggaagaaacggccgtacagt 58
||||| |||||| ||||||||||||| ||||||| ||| ||||
Sbjct: 2 cactgttgaggagttccacagtaggacgaaacggtcgttcagt 44
>RF00163;Hammerhead_1;FN357910.1/79490-79445 6183:Schistosoma
mansoni
Length = 46
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 16 cactgctgaggatttccacagtaggaagaaacggccgtacagt 58
||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct: 2 cactgctgaggatacccacaataggacgaaacggccgtccagt 44
>RF00163;Hammerhead_1;FN359488.1/1134-1177 6183:Schistosoma
mansoni
Length = 44
Score = 46.1 bits (23), Expect = 7e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 20 gctgaggatttccacagtaggaagaaacggccgtacagt 58
|||||||||| ||||| ||||| ||||||||||| ||||
Sbjct: 6 gctgaggattcccacaataggatgaaacggccgttcagt 44
>RF00163;Hammerhead_1;FN367171.1/574-529 6183:Schistosoma mansoni
Length = 46
Score = 46.1 bits (23), Expect = 7e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 15 gcactgctgaggatttccacagtaggaagaaacggccgt 53
||||||||||||||| ||| | ||||| |||||||||||
Sbjct: 1 gcactgctgaggattcccatactaggacgaaacggccgt 39
>RF00163;Hammerhead_1;FN357564.1/34363-34408 6183:Schistosoma
mansoni
Length = 46
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 15 gcactgctgaggatttccacagtaggaagaaacgg 49
||||||||||||| | ||||||||||| |||||||
Sbjct: 1 gcactgctgaggagtcccacagtaggacgaaacgg 35
>RF00163;Hammerhead_1;FN365209.1/1282-1237 6183:Schistosoma
mansoni
Length = 46
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 16 cactgctgaggatttccacagtaggaagaaacggccgtacagt 58
|||||||||||| |||||||| ||| ||||||||||| ||||
Sbjct: 2 cactgctgaggagttccacagacggacgaaacggccgtccagt 44
>RF00008;Hammerhead_3;FN369767.1/103-53 6183:Schistosoma mansoni
Length = 51
Score = 46.1 bits (23), Expect = 7e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 2 ggatcgtggatgcgcactgctgaggatttccacagtaggaagaaacggccg 52
|||||||| |||||||||||||| || | ||| | ||||| ||||||||||
Sbjct: 1 ggatcgtgtatgcgcactgctgatgagtcccataataggacgaaacggccg 51
>RF00163;Hammerhead_1;FN376192.1/1863-1908 6183:Schistosoma
mansoni
Length = 46
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 16 cactgctgaggatttccacagtaggaagaaacgg 49
|||||||||||| ||||||| ||||| |||||||
Sbjct: 2 cactgctgaggagttccacaataggacgaaacgg 35
>RF00163;Hammerhead_1;FN371520.1/852-897 6183:Schistosoma mansoni
Length = 46
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 17 actgctgaggatttccacagtaggaagaaacggccgtacagt 58
||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 3 actgctgaggagccccacagtaggacgaaacggccgttcagt 44
>RF00163;Hammerhead_1;FN359271.1/154906-154861 6183:Schistosoma
mansoni
Length = 46
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 15 gcactgctgaggatttccacagtaggaagaaacg 48
||||||||||||| |||||||||||| ||||||
Sbjct: 1 gcactgctgaggaggtccacagtaggacgaaacg 34
>RF00163;Hammerhead_1;FN357486.1/605427-605472 6183:Schistosoma
mansoni
Length = 46
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 21 ctgaggatttccacagtaggaagaaacggccgtacagt 58
||||||| | ||||||||||| ||||||||||| ||||
Sbjct: 7 ctgaggagtcccacagtaggacgaaacggccgtccagt 44
>RF00163;Hammerhead_1;FN359293.1/157091-157046 6183:Schistosoma
mansoni
Length = 46
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 17 actgctgaggatttccacagtaggaagaaacggccgtacagt 58
|||||| |||| | ||||| ||||||||||||||||| ||||
Sbjct: 3 actgctaaggagtcccacaataggaagaaacggccgttcagt 44
>RF00163;Hammerhead_1;FN371163.1/242-197 6183:Schistosoma mansoni
Length = 46
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 15 gcactgctgaggatttccacagtaggaagaaacg 48
||||||||||||| | ||||| ||||||||||||
Sbjct: 1 gcactgctgaggagtaccacaataggaagaaacg 34
