miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
          Length = 112

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 54  ttgatttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||||||
Sbjct: 84  ttgatttgattgagccgtgccaatatc 110




>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
          Length = 118

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 54  ttgatttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||||||
Sbjct: 80  ttgatttgattgagccgtgccaatatc 106




>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
          (papaya)
          Length = 104

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 57 atttgattgagccgtgccaatatc 80
          ||||||||||||||||||||||||
Sbjct: 69 atttgattgagccgtgccaatatc 92




>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
          (thale cress)
          Length = 101

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 57 atttgattgagccgtgccaatatc 80
          ||||||||||||||||||||||||
Sbjct: 66 atttgattgagccgtgccaatatc 89




>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
          truncatula (barrel medic)
          Length = 104

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 57 atttgattgagccgtgccaatatc 80
          ||||||||||||||||||||||||
Sbjct: 69 atttgattgagccgtgccaatatc 92




>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
          Length = 102

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 57 atttgattgagccgtgccaatatc 80
          ||||||||||||||||||||||||
Sbjct: 67 atttgattgagccgtgccaatatc 90




>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
          (papaya)
          Length = 100

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 tttgattgagccgtgccaatatc 80
          |||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88




>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
           (papaya)
          Length = 143

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 109 tttgattgagccgtgccaatatc 131




>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
          (papaya)
          Length = 99

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 tttgattgagccgtgccaatatc 80
          |||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87




>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
          Length = 82

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 tttgattgagccgtgccaatatc 80
          |||||||||||||||||||||||
Sbjct: 58 tttgattgagccgtgccaatatc 80




>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
          (castor bean)
          Length = 100

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 tttgattgagccgtgccaatatc 80
          |||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88




>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
           (castor bean)
          Length = 138

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 104 tttgattgagccgtgccaatatc 126




>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
           (castor bean)
          Length = 125

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 91  tttgattgagccgtgccaatatc 113




>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
          (castor bean)
          Length = 99

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 tttgattgagccgtgccaatatc 80
          |||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87




>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
           (barrel medic)
          Length = 117

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 83  tttgattgagccgtgccaatatc 105




>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
          Length = 114

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 80  tttgattgagccgtgccaatatc 102




>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
          Length = 100

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 tttgattgagccgtgccaatatc 80
          |||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88




>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
          Length = 144

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 110 tttgattgagccgtgccaatatc 132




>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
          Length = 114

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 80  tttgattgagccgtgccaatatc 102




>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
          Length = 134

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 100 tttgattgagccgtgccaatatc 122




>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
          Length = 101

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 tttgattgagccgtgccaatatc 80
          |||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89




>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
          Length = 98

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 tttgattgagccgtgccaatatc 80
          |||||||||||||||||||||||
Sbjct: 64 tttgattgagccgtgccaatatc 86




>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
          bicolor (sorghum)
          Length = 101

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 tttgattgagccgtgccaatatc 80
          |||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89




>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
           (sorghum)
          Length = 144

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 110 tttgattgagccgtgccaatatc 132




>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
          Length = 102

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 tttgattgagccgtgccaatatc 80
          |||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90




>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
          Japonica Group
          Length = 101

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 tttgattgagccgtgccaatatc 80
          |||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89




>RF00643;MIR171_1;CR962130.3/48254-48370 3880:Medicago truncatula
           (barrel medic)
          Length = 117

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 58  tttgattgagccgtgccaatat 79
           ||||||||||||||||||||||
Sbjct: 83  tttgattgagccgtgccaatat 104




>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
          Length = 134

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  ttgattgagccgtgccaatatc 80
           ||||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatatc 122




>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
          Length = 135

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  ttgattgagccgtgccaatatc 80
           ||||||||||||||||||||||
Sbjct: 102 ttgattgagccgtgccaatatc 123