miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
          (papaya)
          Length = 82

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 1  tgacagaagagagtgagtacacgcaggcaattgtat 36
          ||||||||||||||||| ||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacacgcaggcaattgtat 37




>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
          (castor bean)
          Length = 83

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 1  tgacagaagagagtgagtacacgcaggcaattgtat 36
          ||||||||||||||||| ||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacacgcaggcaattgtat 37




>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
          Length = 82

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 1  tgacagaagagagtgagtacacgcaggcaattgtata 37
          ||||||||||||||||| ||||  |||||||||||||
Sbjct: 2  tgacagaagagagtgagcacacagaggcaattgtata 38




>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
          Length = 83

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 1  tgacagaagagagtgagtacacgcaggcaatt 32
          ||||||||||||||||| ||| ||||||||||
Sbjct: 2  tgacagaagagagtgagcacatgcaggcaatt 33